Locus 4917

Sequence ID 3R_DroMel_CAF1
Location 12,907,278 – 12,907,392
Length 114
Max. P 0.510664
window8049

overview

Window 9

Location 12,907,278 – 12,907,392
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 78.40
Mean single sequence MFE -19.13
Consensus MFE -10.70
Energy contribution -11.03
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.56
SVM decision value -0.04
SVM RNA-class probability 0.510664
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12907278 114 + 27905053
UAAAUAAAUGCACCUGGGUGCAACUAGUUUUGAUACCCUCACAACAAGUAUUGAGGUAUACUGAUCACAAAGGUAUAUUGAAACAAAAAAAAUUUAAAGAUACAUAUUUAUAUG
((((((..(((((....)))))....((((..(((.(((((..........)))))..((((.........)))))))..))))....................)))))).... ( -21.10)
>DroEre_CAF1 24471 103 + 1
UAAAUAAAUGCACCUGGGUGCAACUAGUUUCGAUACCCUUACAAAAAGC--UGAGGUAUACUGAUUAGAAAAUUAA--G-------AACAAAGGUAAAAUUACAAAUUUAUAUA
...((((((((((....))))..((((((...(((((.(((........--))))))))...))))))........--.-------...................))))))... ( -18.20)
>DroYak_CAF1 25525 107 + 1
UAAAUAAAUGCACCUGGGUGCAACUAGUUUUGAUACCCUUACAAAAAGC-----GGUAUACUGAUCAGUAAAUUAA--CAAAAGUAAACAAAAGUAAAAUUACAAAAUGAUAUA
........(((((....)))))..((.(((((.(((((((.....))).-----))))((((....))))......--))))).)).......(((....)))........... ( -18.10)
>consensus
UAAAUAAAUGCACCUGGGUGCAACUAGUUUUGAUACCCUUACAAAAAGC__UGAGGUAUACUGAUCAGAAAAUUAA__C_AAA__AAACAAAAGUAAAAUUACAAAUUUAUAUA
........(((((....))))).((.(((...(((((.................)))))...))).)).............................................. (-10.70 = -11.03 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:59 2006