Locus 4915

Sequence ID 3R_DroMel_CAF1
Location 12,906,661 – 12,906,777
Length 116
Max. P 0.796665
window8043

overview

Window 3

Location 12,906,661 – 12,906,777
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 75.14
Mean single sequence MFE -30.30
Consensus MFE -16.45
Energy contribution -16.23
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.11
Structure conservation index 0.54
SVM decision value 0.60
SVM RNA-class probability 0.796665
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12906661 116 - 27905053
AUGUGCAGCGACAAACUGUCUGUGAGUGGGCAAGAAAAGGCGGCAUACAGUGCGCGCCAAAAUAUUGCAUACAGUACAAAAGCAAUAAAUAUUUGACUA----GAGAAAUCUGAAUCAAA
.(((((.(((((.....))).))..(((.((((.....((((((((...)))).))))......)))).))).))))).............(((((.((----((....))))..))))) ( -30.40)
>DroEre_CAF1 23886 113 - 1
AUGUGCAGCGUCAAACUGUCUGUGUGUGUGUAAGGGAAGGCGGC-UACAGAGCGCGCCAAAAUAUUGCAUACAGCACAAAGGCACUUACAAGUCGCCAA----GAG--AACUAAAUCAAA
.(((((........((.....)).(((((((((.....((((((-(....))).))))......))))))))))))))..((((((....))).)))..----...--............ ( -32.80)
>DroYak_CAF1 24940 101 - 1
AUGGGCAGCGACAAGCUGUCUGUGUGUGGGUAAGGAAAGGCGGCUUACAGUGCGCGCCAAAAUAUUGCAUAC-----------------CAUUCGCCAAGAAAGAG--AACUUAAUCAAA
..(((((((.....)))))))(((.((((((((.....((((((.......)).))))......))))...)-----------------))).)))..........--............ ( -27.70)
>consensus
AUGUGCAGCGACAAACUGUCUGUGUGUGGGUAAGGAAAGGCGGC_UACAGUGCGCGCCAAAAUAUUGCAUACAG_ACAAA_GCA_U_A_AAUUCGCCAA____GAG__AACUAAAUCAAA
....((((((......)).))))..(((.((((.....((((((.......)).))))......)))).)))................................................ (-16.45 = -16.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:54 2006