Locus 4914

Sequence ID 3R_DroMel_CAF1
Location 12,895,936 – 12,896,026
Length 90
Max. P 0.723056
window8042

overview

Window 2

Location 12,895,936 – 12,896,026
Length 90
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.71
Mean single sequence MFE -23.85
Consensus MFE -19.52
Energy contribution -18.81
Covariance contribution -0.72
Combinations/Pair 1.24
Mean z-score -1.53
Structure conservation index 0.82
SVM decision value 0.40
SVM RNA-class probability 0.723056
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12895936 90 + 27905053
AUUGA------CGA-AGCACCAACUUCGUUUGCAUUUCCAACAGUAGCAAAUGCGAAUUCGAGGAACUGGUGCUCUAUUUGAAAUCCGUGCGCUAGA
....(------((.-.((((((.((((((((((((((.(.......).)))))))))..)))))...))))))((.....))....)))........ ( -23.00)
>DroPse_CAF1 10656 96 + 1
AUUUUUGUUUAAAU-GUCGCCAGUUUCAGUUGCAUUUCUAGAUCUCAGAAAUGCAAAUAUGAGCAUUGGGUGUGGCAUUAAAAAUCCGUGCGCUAGG
.......(((.(((-(((((((((((((.((((((((((.(....)))))))))))...)))).)))))...))))))).))).............. ( -25.20)
>DroSec_CAF1 13591 90 + 1
AUUGA------CGA-AGCACCAACUUCGUUUGCAUUUCCAUCUGUAGCAAAUGCGAAUUCGAGGAACUGGUGCUCUAUUUUAAAUCCGUGCGCUAGA
.....------.((-.((((((.((((((((((((((.(.......).)))))))))..)))))...))))))))...................... ( -22.60)
>DroSim_CAF1 14551 90 + 1
AUUGA------CGA-AGCACCAACUUCGUUUGCAUUUCCAUCUGUAGCAAAUGCGAAUUCGAGGAACUGGUGCUCUAUUUUAAAUCCGUGCGCUAGA
.....------.((-.((((((.((((((((((((((.(.......).)))))))))..)))))...))))))))...................... ( -22.60)
>DroEre_CAF1 12706 91 + 1
AUUCG------CGAGAGCACCAACUUCGUUUGCAUUUCCACCUGUAGCAAAUGCGAACUCGAGGAACUGGUGCUCUACUUAAAAUCCGUGCGCUAGA
....(------(((((((((((.((((((((((((((.(.......).))))))))))..))))...)))))))))((.........)).))).... ( -29.50)
>DroYak_CAF1 13930 91 + 1
AUUCA------UGAAUGCACCAACUUCGUUUGCAUUUCCACCUGUAGCAAAUGCGAAUUCGAGGAACUGGUGUUCUAUUUAAAAUCCGUGCGCUAGA
.....------(((((((((((.((((((((((((((.(.......).)))))))))..)))))...))))))...)))))................ ( -20.20)
>consensus
AUUGA______CGA_AGCACCAACUUCGUUUGCAUUUCCACCUGUAGCAAAUGCGAAUUCGAGGAACUGGUGCUCUAUUUAAAAUCCGUGCGCUAGA
.......................(((((.((((((((.(.......).))))))))...)))))..(((((((................))))))). (-19.52 = -18.81 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:54 2006