Locus 4911

Sequence ID 3R_DroMel_CAF1
Location 12,893,086 – 12,893,183
Length 97
Max. P 0.527379
window8036

overview

Window 6

Location 12,893,086 – 12,893,183
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 99.59
Mean single sequence MFE -23.60
Consensus MFE -23.00
Energy contribution -23.20
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.97
SVM decision value -0.01
SVM RNA-class probability 0.527379
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12893086 97 + 27905053
UUGCCAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA
..(((((((((......))))..)))))......((((...))))......(((((.((((((((.......).)))))))....)))))....... ( -22.80)
>DroSec_CAF1 10677 97 + 1
UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA
...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... ( -23.80)
>DroSim_CAF1 9683 97 + 1
UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA
...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... ( -23.80)
>DroEre_CAF1 9783 97 + 1
UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA
...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... ( -23.80)
>DroYak_CAF1 10966 97 + 1
UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA
...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... ( -23.80)
>consensus
UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA
...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... (-23.00 = -23.20 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:48 2006