Locus 4904

Sequence ID 3R_DroMel_CAF1
Location 12,885,117 – 12,885,209
Length 92
Max. P 0.825161
window8027

overview

Window 7

Location 12,885,117 – 12,885,209
Length 92
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 88.87
Mean single sequence MFE -22.86
Consensus MFE -18.38
Energy contribution -18.06
Covariance contribution -0.32
Combinations/Pair 1.14
Mean z-score -1.73
Structure conservation index 0.80
SVM decision value 0.69
SVM RNA-class probability 0.825161
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12885117 92 - 27905053
-----UUACACUUUCUUUUCUGUGCAGGAACUUGAAAUUCAGUUUAAUGCAUACGG------AUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGCUG
-----........(((.(((((((((.(((((.(.....))))))..)))))).))------)...)))..(((((((.....)))))))(((.....))).. ( -20.90)
>DroSec_CAF1 2889 92 - 1
-----UUACACUUUCUUUUCUGUGCAGAAACUUGAAAUUCAGUUUAAUGCAUACGG------AUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGCUA
-----........(((.(((((((((.(((((.(.....))))))..)))))).))------)...)))..(((((((.....)))))))(((.....))).. ( -20.50)
>DroSim_CAF1 1484 91 - 1
------UACACUUUCUUUUCUGUGCAGAAACUUGAAAUUCAGUUUAAUGCAUACGG------AUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGAUG
------...........(((((((((.(((((.(.....))))))..)))))).))------)...(((..(((((((.....)))))))..)))........ ( -20.10)
>DroEre_CAF1 1386 103 - 1
GGUAUCCACACUUUCCUUUCUGUGUAGGAACUUGAAAUUCAGUUUAAUGCAUUCGGAUACCGAUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGACUU
(((((((.((..(((((........)))))..)).......((.....))....)))))))((..(((((((((.......)))))))))..))......... ( -29.30)
>DroYak_CAF1 2954 100 - 1
AGUAUCUACACUUUCUUUUCUGUGCAGGAACUUGAAAUUCAGUUUAAUGCAUGCGGAU---GAUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGCUU
.(((((............((((((((.(((((.(.....))))))..)))..))))).---)))))(((..(((((((.....)))))))..)))........ ( -23.52)
>consensus
_____CUACACUUUCUUUUCUGUGCAGGAACUUGAAAUUCAGUUUAAUGCAUACGG______AUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGCUG
....................((((((.(((((.(.....))))))..)))))).............(((..(((((((.....)))))))..)))........ (-18.38 = -18.06 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:40 2006