| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,882,505 – 12,882,604 |
| Length | 99 |
| Max. P | 0.989579 |
| Location | 12,882,505 – 12,882,604 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 80.78 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -20.99 |
| Energy contribution | -20.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.98 |
| SVM decision value | 2.17 |
| SVM RNA-class probability | 0.989579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12882505 99 + 27905053 UUCCCCCUUACCAAUCGUUCCCCCCCACCAUCGUCCGUCUCUUUCUCGCUGACAGCUGAUGCUGCCGCACAGAUCU-UUGCAUAUGCACUGGCGUCGGCU ...............................................((((((.(((..(((....(((.......-.)))....)))..))))))))). ( -20.10) >DroSim_CAF1 13731 80 + 1 UUCC-------------------CCCACCAUCGUCCGUCUCUUUCCCGCCGACAGCUGAUGCUGCCGCACAGAUCU-UUGCAUAUGCACUGGCGUCGGCU ....-------------------........................((((((.(((..(((....(((.......-.)))....)))..))))))))). ( -22.30) >DroEre_CAF1 13274 78 + 1 ----------------------CCCCACCAUCGUGCGUCUCUUUCCCGCCGACAGCUGAUGCUGCCGCACAGAUCUUUUGCAUAUGCACUGGCGUCGGCU ----------------------...(((....)))............((((((.(((..(((....(((.........)))....)))..))))))))). ( -21.80) >consensus UUCC__________________CCCCACCAUCGUCCGUCUCUUUCCCGCCGACAGCUGAUGCUGCCGCACAGAUCU_UUGCAUAUGCACUGGCGUCGGCU ...............................................((((((.(((..(((....(((.........)))....)))..))))))))). (-20.99 = -20.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:37 2006