| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,882,055 – 12,882,155 |
| Length | 100 |
| Max. P | 0.717169 |
| Location | 12,882,055 – 12,882,155 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.96 |
| Mean single sequence MFE | -28.94 |
| Consensus MFE | -17.97 |
| Energy contribution | -17.96 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717169 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12882055 100 - 27905053 GCC-----UGGCGCCACUGACG------UAAUAAAAGAAAUAAUAGUAACGAUGUCGGCGGCAGAGGCGUC---GUCGGAAUGGCGCCACACCAACACACGCUCACCUUAGACA ((.-----((..(((.((((((------(......................))))))).)))...((((((---((....)))))))).........)).))............ ( -28.45) >DroVir_CAF1 14988 106 - 1 GCCACAGUGGGCGCCACUGACGUAAACGUAAUAAAAGAAAUAAUAGUAACGAUGUCGGCGGC---GGCGUC---GUCGCAAUGGCGCCA--CCAAUAUAAACUUAUAUCAGACA .........(((((((...(((....)))................(..(((((((((....)---))))))---))..)..))))))).--....................... ( -32.20) >DroGri_CAF1 22729 109 - 1 GCCACAGUGGGCGCCACUGACGUAAACGUAAUAAAAGAAAUAAUAGUAACGAUGUCGGCGGC---GGCGUCGUCGUCGCAAUGGCGCCA--GCAAUAUAAACUUAUAUCAGACA ......((.(((((((.(((((....)))....................(((((.(((((..---..))))).))))))).))))))).--))..................... ( -33.60) >DroEre_CAF1 12836 100 - 1 GCC-----UGGCGCCACUGACG------UAAUAAAAGAAAUAAUAGUAACGAUGUUGGCGGCAGAGGCGUC---GUCGGAAUGGCGCCACACCAACACACGCUCACCUCAGACA (((-----((.(((((..(.((------(.((.............)).))).)..))))).))).((((((---((....))))))))............))............ ( -27.42) >DroMoj_CAF1 13734 106 - 1 GCCACAGUGGGCGCCACUGACGUAAACGUAAUAAAAGAAAUAAUAGUAACGAUGUCGGCGGC---GGCGUC---GUCGCAAUGGCGCCA--CCAAUAUAAACUUAUAUCAGACA .........(((((((...(((....)))................(..(((((((((....)---))))))---))..)..))))))).--....................... ( -32.20) >DroAna_CAF1 12476 80 - 1 CCC-----UGGCGCCACUGACG------UAAUAAAAGAAAUAAUAGUAACGAUGUCGGC------------------GGAAUGGCGCCA--CCAAUAUAAGCUUAUAUCAG--- ...-----((((((((((((((------(......................))))))).------------------....))))))))--....................--- ( -19.75) >consensus GCC_____GGGCGCCACUGACG______UAAUAAAAGAAAUAAUAGUAACGAUGUCGGCGGC___GGCGUC___GUCGCAAUGGCGCCA__CCAAUAUAAACUUAUAUCAGACA .........(((((((((((((..............................)))))).......(((......)))....))))))).......................... (-17.97 = -17.96 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:36 2006