Locus 4900

Sequence ID 3R_DroMel_CAF1
Location 12,880,437 – 12,880,555
Length 118
Max. P 0.972057
window8022

overview

Window 2

Location 12,880,437 – 12,880,555
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 95.09
Mean single sequence MFE -32.60
Consensus MFE -32.18
Energy contribution -31.74
Covariance contribution -0.44
Combinations/Pair 1.17
Mean z-score -1.41
Structure conservation index 0.99
SVM decision value 1.69
SVM RNA-class probability 0.972057
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12880437 118 - 27905053
AACAAUAACAAUUUUUAACGUGGUGGAAAAGGUGUUU-UUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUACCACCGCUAUAUACGUAUACGUUUGUUUGUUU
(((((..((((........(((((((....((((...-..(((((((..(((.....)))((......))....))))))).)))).))))))).....(((....)))))))))))). ( -29.50)
>DroSec_CAF1 10896 118 - 1
AACAAUAACAAUU-UUAACGUGGUGGAAAAGGUGUUUUUUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUACCACCGCUAUAUACGUAUACGUAUGUUUGUUU
......(((((..-.....(((((((....((((......(((((((..(((.....)))((......))....))))))).)))).))))))).(((((((....)))))))))))). ( -32.40)
>DroSim_CAF1 11259 118 - 1
AACAAUAACAAUU-UUAACGUGGUGGAAAAGGUGUUUUUUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUACCACCGCUAUAUAUGUAUACGUAUGUUUGUUU
......(((((..-.....(((((((....((((......(((((((..(((.....)))((......))....))))))).)))).))))))).(((((((....)))))))))))). ( -30.60)
>DroEre_CAF1 11230 117 - 1
AACAAUAGCAAUU-UUAACGUGGUGGAAAAGGUGUUU-UUCGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUGCCGCCGCUGUAUACGUAUACGUAUGUUUGUCU
.......((((..-.....(((((((....((((...-..(((((((..(((.....)))((......))....))))))).)))).)))))))..((((((....)))))).)))).. ( -35.20)
>DroYak_CAF1 11171 117 - 1
AACAAUAACAAUU-UUAACGUGGUGGAAAAGGCCUUU-UUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUGCCGCCGCAAUAUACGUAUACGUAUGUUUGUUU
......((((...-.....(((((((...(((((...-......)))))(((....(((((..((.........)).))))))))..)))))))((((((((....)))))))))))). ( -35.30)
>consensus
AACAAUAACAAUU_UUAACGUGGUGGAAAAGGUGUUU_UUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUACCACCGCUAUAUACGUAUACGUAUGUUUGUUU
......(((((........(((((((....((((......(((((((..(((.....)))((......))....))))))).)))).))))))).(((((((....)))))))))))). (-32.18 = -31.74 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:35 2006