Locus 49

Sequence ID 3R_DroMel_CAF1
Location 307,510 – 307,630
Length 120
Max. P 0.782514
window78

overview

Window 8

Location 307,510 – 307,630
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.25
Mean single sequence MFE -40.92
Consensus MFE -34.08
Energy contribution -34.68
Covariance contribution 0.60
Combinations/Pair 1.06
Mean z-score -1.53
Structure conservation index 0.83
SVM decision value 0.56
SVM RNA-class probability 0.782514
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 307510 120 - 27905053
CGUCCACGGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUGUUCCGAAACUGGGGAAAUUCCUUGGGCAUCUUAAGGAUAAACUGCUCCAGCUCGUAUAGGGCCAUUAGGCGCUCGA
((((...(((....).))(((((((....((((((((((((......)))..(..(((.....)))..)...)))))))))....))))))).((((.....)))).....))))..... ( -43.00)
>DroSec_CAF1 43912 120 - 1
CUUCCACCGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUGUUCCGAAACUGGGGAAAUUCCUUGGGCAUCUUAAGGAUAAACUGCUCCAGCUCGUAUAGGGCCAUCAGGCGCUCGA
.........(((..(.(((((((((....((((((((((((......)))..(..(((.....)))..)...)))))))))....))))))).((((.....)))).....)))..))). ( -41.10)
>DroSim_CAF1 44759 120 - 1
CUUCCACCGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUGUUCCGAAACUGGGGAAAUUCCUUGGGCAUCUUAAGGAUAAACUGCUCCAGCUCGUAUAGGGCCAUCAGGCGCUCGA
.........(((..(.(((((((((....((((((((((((......)))..(..(((.....)))..)...)))))))))....))))))).((((.....)))).....)))..))). ( -41.10)
>DroEre_CAF1 46832 120 - 1
CGUCCACGGCGAAGGACCGGGGCAGAAACUCCUUGAGGUUGAUGUUCCGGAACUGUGGAAAUUCCUUUGGCAUCUUAAGGAUAAACUGCUCCAAUUCGUAUAGGGCCAUUAGGCGCUCGA
.((((........)))).(((((((....((((((((((..(..(((((......)))))......)..))..))))))))....)))))))...(((...((.(((....))).))))) ( -40.30)
>DroYak_CAF1 46648 120 - 1
CGUCCACGGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUAUUCCGGAACUGGGGAAAUUCUUUCGGCAUCUUAAGGAUAAACUGCUCCAACUCAUAUAGGGCCAUUAGCCGCUCGA
.((((..(((....).))(((((((....(((((((((((((..((((........))))......)))))..))))))))....)))))))..........)))).............. ( -39.10)
>consensus
CGUCCACGGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUGUUCCGAAACUGGGGAAAUUCCUUGGGCAUCUUAAGGAUAAACUGCUCCAGCUCGUAUAGGGCCAUUAGGCGCUCGA
.......(((....).))(((((((....((((((((((((......)))..(..(((.....)))..)...)))))))))....)))))))...(((...((.(((....))).))))) (-34.08 = -34.68 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:20 2006