Locus 4894

Sequence ID 3R_DroMel_CAF1
Location 12,867,084 – 12,867,204
Length 120
Max. P 0.682913
window8013

overview

Window 3

Location 12,867,084 – 12,867,204
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -34.33
Consensus MFE -31.36
Energy contribution -31.86
Covariance contribution 0.50
Combinations/Pair 1.03
Mean z-score -1.56
Structure conservation index 0.91
SVM decision value 0.31
SVM RNA-class probability 0.682913
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12867084 120 - 27905053
CGCGAACUCGGUGGCUUGUAGAUGUCGAAUUUUUUGAAAAAUAUCUGCAUCUGGGAGCUCAAUAGCGAUGUGGCAUUUCCCUUAAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGC
.(.(((((.((((((((.(((((((.(((((((....))))).)).))))))).)))).....(((..((((((...................))))))...))).))))))))).)... ( -34.71)
>DroSec_CAF1 36768 120 - 1
CGCGAACUCGGCGGCUUGUAGAUGUCAAAUUUUUUGAAAAAUAUCUGCAUCUGGGAGCUCAAUAACGAUGUGGCAUUACCCUUGAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGU
.(.(((((.((((((((.(((((((...(((((....)))))....))))))).)))).....(((..((((((...................))))))...))).))))))))).)... ( -34.11)
>DroSim_CAF1 37419 120 - 1
CGCGAACUCGGCGGCUUGUAGAUGUCGAAUUUUUUGAAAAAUAUCUGCAUCUGGGAGCUCAAUAACGAUGUGGCAUUACCCUUGAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGU
.(.(((((.((((((((.(((((((.(((((((....))))).)).))))))).)))).....(((..((((((...................))))))...))).))))))))).)... ( -36.61)
>DroYak_CAF1 36845 120 - 1
CGCGAACUCGGUGGCUUGUAGAUGUCGAAUUUCUUGAAAAAUAUCUGCAUCUGGGAGCUUAAUAGUGAGGUUGCAUUCCCCUUGAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGU
.(((((((..((((((((((((((((((.....))))....))))))))((.(((((..((((......))))..)))))...)).......))))))...)))).)))........... ( -31.90)
>consensus
CGCGAACUCGGCGGCUUGUAGAUGUCGAAUUUUUUGAAAAAUAUCUGCAUCUGGGAGCUCAAUAACGAUGUGGCAUUACCCUUGAAAAUCUUGGCCACAAAAGUUCCGCCAGUUUCCAGU
.(.(((((.((((((((.(((((((.(((((((....))))).)).))))))).))))...........(((((...................)))))........))))))))).)... (-31.36 = -31.86 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:27 2006