| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,856,215 – 12,856,325 |
| Length | 110 |
| Max. P | 0.548341 |
| Location | 12,856,215 – 12,856,325 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.41 |
| Mean single sequence MFE | -25.47 |
| Consensus MFE | -7.39 |
| Energy contribution | -9.00 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.29 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12856215 110 - 27905053 AGGAUAAUCGGACCUUUGUUGGUUCGCUCCUCAAUUGCAUCUCCAUCCAUAGGUGCGUUAUCCUCCAUCAUAUUCACUGGGUCCAUCUGGUCCU-CCAUCAU--------AUGGUCCUC- ((((((((((((((......))))))..........((((((........))))))))))))))..............(((.((((.((((...-..)))).--------)))).))).- ( -32.00) >DroSim_CAF1 26532 110 - 1 AGGAUAAUCGGACCUUUGUUGGUUCGCUCCUCAAUUGCAUCUCCAUCCAUAGGUGCGUUAUCCUCCGUCAUAUUCUCUGGGUCCAUCUGGUCCU-CCAUCAU--------AUGGUCCUC- ((((((((((((((......))))))..........((((((........))))))))))))))..............(((.((((.((((...-..)))).--------)))).))).- ( -32.00) >DroEre_CAF1 25722 110 - 1 AGGAUAAUUGGACCUUUGUUGGUUCGCUCUUCAAUGGCAUCUCCAUACAUAGCUGCGUUAUCCUCCAUCAUAUUCCCGGCGUCCAUCUCGUCCU-CAGUUGU--------AUGGUCCUC- ((((((((.(((((......)))))(((.....((((.....))))....)))...))))))))..(((((((..(.((((.......))))..-..)..))--------)))))....- ( -25.50) >DroYak_CAF1 25890 110 - 1 AGGAUAAUUGGACCUUUUUUAGUUCGCUCCUCAAUUUCAUCUCCAUCCAUAGCUGCGUUAUCCUCCAGCAAAUUCACAAUGUCCAUCUCGUCCU-CCAUUAA--------AUGGUCCUC- (((((...(((((.......((....)).......................((((.(.......)))))...........)))))....)))))-((((...--------)))).....- ( -15.70) >DroAna_CAF1 25881 120 - 1 AGCACUAUAGGUCCUUUGUUAGUACGUUCCUCGAUCUGAUCUGUCUCAUAAGAUUGGUUCUCAUCCAAUCCCGUACCAACAUCCAUUUGGUCUAGCAGUUGUUCCUCGAUUGGUUCCUCC ((.((((..((.....((((.(((((..........(((......)))...((((((.......)))))).))))).)))).))...))))))..((((((.....))))))........ ( -22.60) >DroPer_CAF1 26730 97 - 1 AAGAUAAUUGGUCGUUUGUUGGCUCGCUCCUGCACAGGAUCAGUCUCUGAAGACUGGUUAUCGUCAUUCAAGUUUUCAAUCUCUAUUUGAUUCU-CUA---------------------- ..((((((..(((.((((..((((.(.((((....)))).)))))..)))))))..)))))).....((((((...........))))))....-...---------------------- ( -25.00) >consensus AGGAUAAUUGGACCUUUGUUGGUUCGCUCCUCAAUUGCAUCUCCAUCCAUAGAUGCGUUAUCCUCCAUCAUAUUCACAACGUCCAUCUGGUCCU_CCAUUAU________AUGGUCCUC_ ((((((((.((((........))))...........((((((........))))))))))))))........................................................ ( -7.39 = -9.00 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:20 2006