Locus 4886

Sequence ID 3R_DroMel_CAF1
Location 12,852,886 – 12,852,976
Length 90
Max. P 0.620480
window7997

overview

Window 7

Location 12,852,886 – 12,852,976
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 81.56
Mean single sequence MFE -15.44
Consensus MFE -12.92
Energy contribution -12.12
Covariance contribution -0.80
Combinations/Pair 1.38
Mean z-score -1.32
Structure conservation index 0.84
SVM decision value 0.18
SVM RNA-class probability 0.620480
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12852886 90 + 27905053
CACCUUUCUAACCUCUCAACCUUUCCUGGCUUAGAUCAAGCACUUCCUGUUCAGAAGAAACAUGCCCUUCGGUUCCGAUCUGCGUUCCCU
....(((((....(((.(((........((((.....)))).......))).)))))))).((((...(((....)))...))))..... ( -12.66)
>DroSec_CAF1 22801 90 + 1
CACCUUUUUAACCUGUCAACCUUUCCUGGCUCAGAUCAAGCACUUCCUUUUCAGAAGAAACAUGCCCUUCGGUUCUGAUCUGCGUUCCCU
...........................(((.(((((((....((((.......))))......(((....)))..))))))).))).... ( -13.80)
>DroSim_CAF1 22898 90 + 1
CACCUUUCUAACCUCUCAACCUUUCCUGGCUCAGAUCAAGCACUUCCUGUUCAGAAGAAACAUGCCCUUCGGUUCCGAUCUGCGUUCCCU
...........................(((.((((((.....((((.......))))......(((....)))...)))))).))).... ( -13.30)
>DroEre_CAF1 22414 90 + 1
CACCACUCUCACCUCUCAAAAUUUCCCGGCCUAGAUCAAACACUUCCUGUUCCGAAGGAACAUGCCCUUUGGUUCCGAUCUACGCUCCCU
...........................(((.((((((.((((.....))))(((((((.......)))))))....)))))).))).... ( -19.30)
>DroYak_CAF1 22554 89 + 1
CACCUUUCUCAAUGCUG-ACCUUUCCUGGCCUAGAUCAAGCACUUCCUGUUCAGAAGAAACAUGCCUUUUGGUUCCGAUCUGCGAUCCCU
.............((((-........))))...((((..(((..((....(((((((........)))))))....))..)))))))... ( -13.60)
>DroAna_CAF1 22553 88 + 1
UAUGAUUUGCAAUUCACA--AUUACUCGUUUCAGAUCAAGCACUUCUUGUUUAGGAGGAACAUGCCCUUCGGUUCGGAUCUGAGAUCUUU
..(((........)))..--.......(((((((((((((((.....))))).(((((.......)))))......)))))))))).... ( -20.00)
>consensus
CACCUUUCUAACCUCUCAACCUUUCCUGGCUCAGAUCAAGCACUUCCUGUUCAGAAGAAACAUGCCCUUCGGUUCCGAUCUGCGUUCCCU
...........................(((.((((((.....((((.......))))......(((....)))...)))))).))).... (-12.92 = -12.12 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:12 2006