Locus 4881

Sequence ID 3R_DroMel_CAF1
Location 12,843,546 – 12,843,644
Length 98
Max. P 0.867809
window7991

overview

Window 1

Location 12,843,546 – 12,843,644
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 75.41
Mean single sequence MFE -32.62
Consensus MFE -18.55
Energy contribution -19.72
Covariance contribution 1.17
Combinations/Pair 1.22
Mean z-score -1.82
Structure conservation index 0.57
SVM decision value 0.86
SVM RNA-class probability 0.867809
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12843546 98 - 27905053
-GAGGCUGCAGACAAACCAAAGUGGUAAUGGACG-CCAAUUAUGGACGGGCCAUGUGGCCACUUGCCACUU-GCU-ACUUGCUACUUGCUACUUGCUGCUGC
-...((.((((.(((....((((((((((((.((-(((....))).))((((....)))).....))).))-)))-))))((.....))...))))))).)) ( -34.40)
>DroSec_CAF1 12944 84 - 1
-GCGGCUGCAGAUCAACCAAAGUGGUAAUGGACG-CCAAUUAUGGACGGGCCAUGUGGCCACUUGCCACUU-GC---------------UACUUGCUGCUGC
-(((((.((((........(((((((((....((-(((....))).))((((....))))..)))))))))-..---------------...)))).))))) ( -33.82)
>DroSim_CAF1 13098 91 - 1
-UCGGCUGCGGAUCAACCAAAGUGGUAAUGGACG-CCAAUUAUGGACGGGCCAUGUGGCCACUUGCCACUU-GCU-ACU-------UGCUACUUGCUGCUGC
-.((((.((((.....)).((((((((((((.((-(((....))).))((((....)))).....))).))-)))-)))-------).......)).)))). ( -32.70)
>DroEre_CAF1 13118 91 - 1
-GCGGUUGCGGACUAACUAAAGUGGUAAUGGGCG-CCGAUUAUGGACGGGCCAUGUGGCCACUUGCCGCUU-GCC-ACU-------UGCCAGUUGCUGCUGC
-(((((.(((.(((.....(((((((((..(((.-(((........))))))..(((((.....)))))))-)))-)))-------)...)))))).))))) ( -38.00)
>DroYak_CAF1 13070 77 - 1
-GCGGUUGCGGACCAACUAAAGUGGUAAUGGACG-CCAAUUAUGGACGAGCCAUGUGGCCACUUGCC-----------------------ACUUGCUGCUGC
-(((((.(((......)..(((((((((.(...(-(((..(((((.....)))))))))..))))))-----------------------)))))).))))) ( -28.10)
>DroAna_CAF1 13206 88 - 1
GGCGGCUGCCGGCCAACUGAAGUUGUAAUGGGGGACCAAUUAUGGCCU--CAAUGUGUUGUCUUAGC--UUGGCUAACU-------GGCUAC---CAACAGC
...((..(((((.(((((((.((..((((((....)).))))..)).)--))....))))..(((((--...)))))))-------)))..)---)...... ( -28.70)
>consensus
_GCGGCUGCGGACCAACCAAAGUGGUAAUGGACG_CCAAUUAUGGACGGGCCAUGUGGCCACUUGCCACUU_GCU_ACU_______UGCUACUUGCUGCUGC
.(((((.((((........(((((((.((((.((.(((....))).))..))))...)))))))((......))..................)))).))))) (-18.55 = -19.72 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:06 2006