Locus 4874

Sequence ID 3R_DroMel_CAF1
Location 12,819,243 – 12,819,363
Length 120
Max. P 0.606720
window7980

overview

Window 0

Location 12,819,243 – 12,819,363
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -30.75
Consensus MFE -28.40
Energy contribution -28.40
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -1.43
Structure conservation index 0.92
SVM decision value 0.15
SVM RNA-class probability 0.606720
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12819243 120 - 27905053
AAGGAAAAGUGUUUAUGUCCAGGUUUACGUUGCGGUCCAGGAUUAAAGUGUCCAGAUCCUCGAAAAAGGAGAGAAAUCUCAAGUUUCGGAAAUCAUUGUGACUCAAAUCGAGAAACUUGG
..................((((((((...(((.((((((((((......)))).(((..((((((...((((....))))...))))))..)))..)).)))))))......)))))))) ( -33.60)
>DroSec_CAF1 194570 120 - 1
AGGGAAAAGUGUUUAUGUCCAAGUUUACGUUGCGAUCCAGGAUUAACGUGUCCAGAUCCUCGAAAAAGGAGAGAAAUCUCAGAUUUCGGAAAUCAUUGUGACUCAAAUCGAGAAACUUGG
..................((((((((..((..((((...((((......)))).(((..((((((...((((....))))...))))))..)))))))..))((.....)).)))))))) ( -32.40)
>DroSim_CAF1 196856 120 - 1
AGGGAAAAGUGUUUAUGUCCAGGUUUACGUUGCGGUCCAGGAUUAAAGUGUCCAGAUCCUCGAAAAAGGAGAGAAAUCUCAGAUUUCGGAAAUCAUUGUGACUUAAAUCGAGAAACUUGG
..................((((((((.((....((((((((((......)))).(((..((((((...((((....))))...))))))..)))..)).)))).....))..)))))))) ( -32.00)
>DroEre_CAF1 203003 120 - 1
AGGGAAAGGUGUUAAUAUCCAGGUUCACGUUGCGGUCCAGAAUUAAAGUGUCCAGAUCCUCGAAGAAGGAGAGAAAUCUAAGAUUUCGGAAAUCAUUGUGACUCAAAUCGAGAAACUUGG
..................(((((((((((.((...(((..................((((......))))..((((((...)))))))))...)).)))))(((.....)))..)))))) ( -25.00)
>consensus
AGGGAAAAGUGUUUAUGUCCAGGUUUACGUUGCGGUCCAGGAUUAAAGUGUCCAGAUCCUCGAAAAAGGAGAGAAAUCUCAGAUUUCGGAAAUCAUUGUGACUCAAAUCGAGAAACUUGG
..................((((((((..((..((((...((((......)))).(((..((((((...((((....))))...))))))..)))))))..))((.....)).)))))))) (-28.40 = -28.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:55 2006