Locus 4873

Sequence ID 3R_DroMel_CAF1
Location 12,818,234 – 12,818,354
Length 120
Max. P 0.752293
window7979

overview

Window 9

Location 12,818,234 – 12,818,354
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -30.23
Consensus MFE -26.11
Energy contribution -26.30
Covariance contribution 0.19
Combinations/Pair 1.08
Mean z-score -1.65
Structure conservation index 0.86
SVM decision value 0.48
SVM RNA-class probability 0.752293
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12818234 120 - 27905053
GCUGAACGCUUGGUAUACUAUUUAGUUAUUGGUUUACCGAACUACUUAUCCAGUUAGGAGUACGUUUGGUAAGAGGGUUUAAGGUGUUCUUUCUUAUCUCUUUUAUCAAACUCAGGAACU
.((((....((((((.((((.........)))).))))))(((.((((......)))))))..((((((((((((((..(((((.......))))).))))))))))))))))))..... ( -34.30)
>DroSec_CAF1 193533 120 - 1
GCUGAACGCUUGGUAUACUAUUUAGAUAUUGGUUUACCGAACUACUUAUCAAGUUAGGAGUACUUUCGGUAAGAGGGCUUAAGGUGUUCUUUCUUAUCUCUUUUAUCAAACUCAGGAACU
.((((....((((((.((((.........)))).))))))(((.((((......)))))))......((((((((((..(((((.......))))).))))))))))....))))..... ( -28.60)
>DroSim_CAF1 195809 120 - 1
GCUGAACGCUUGGUAUACUAUUUAGAUAUUGGUUUACCGAACUACUUAUCAAGUUGGGAGUACUUUCGGUAAGAGGGUUUAAGGUGUUCUUUCUUAUCUCUUUUAUCAAACUCAGGAACU
.((((....((((((.((((.........)))).))))))(((.((((......)))))))......((((((((((..(((((.......))))).))))))))))....))))..... ( -28.30)
>DroEre_CAF1 201934 119 - 1
CCUGAACGCUUGGUAUACCAUUUAGUUGUUGGUUAACCGAGCUCCUUAUCAAGUUAGGAGUACUUUCAGUAAGAGGGCGUAAGGUGUU-UUUCCUAUCUCUUUUAUCAAACUCAGAAGCU
.(((((((((((((..((((.........))))..)))))))((((.........)))))).......(((((((((.(((.((....-...)))))))))))))).....))))..... ( -29.70)
>consensus
GCUGAACGCUUGGUAUACUAUUUAGAUAUUGGUUUACCGAACUACUUAUCAAGUUAGGAGUACUUUCGGUAAGAGGGCUUAAGGUGUUCUUUCUUAUCUCUUUUAUCAAACUCAGGAACU
.((((....((((((.((((.........)))).))))))(((.((((......)))))))......((((((((((..(((((.......))))).))))))))))....))))..... (-26.11 = -26.30 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:54 2006