Locus 4871

Sequence ID 3R_DroMel_CAF1
Location 12,817,143 – 12,817,263
Length 120
Max. P 0.751650
window7977

overview

Window 7

Location 12,817,143 – 12,817,263
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 98.19
Mean single sequence MFE -50.30
Consensus MFE -50.55
Energy contribution -50.30
Covariance contribution -0.25
Combinations/Pair 1.03
Mean z-score -1.79
Structure conservation index 1.00
SVM decision value 0.48
SVM RNA-class probability 0.751650
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12817143 120 - 27905053
AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCACAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCAUUGGAUACGGCUCGCUUUGACA
..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... ( -49.00)
>DroSim_CAF1 193915 120 - 1
AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCACAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCGUUGGAUACGGCUCGCUUUGACA
..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... ( -49.00)
>DroEre_CAF1 200627 120 - 1
AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCACAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCAUUGGACACGGCUCGCUUCGACA
..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... ( -51.60)
>DroYak_CAF1 193180 120 - 1
AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCAGAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCAUUGGACACGGCUCGCUUUGACA
..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... ( -51.60)
>consensus
AGGAGGUGGUCCAGCUGUGGGUUGCUGUGCUGGAGGACAAGGUGCACAAGACCGGCAACGAGCGGCAUCUCAUCCUGGAGCAGGUGAUCAUCGCGGCAUUGGACACGGCUCGCUUUGACA
..(((.((((((((((((((((..((.((((..((((..((((((....(..((....))..).))))))..))))..))))))..)))..))))))..))))).)).)))......... (-50.55 = -50.30 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:52 2006