Locus 4868

Sequence ID 3R_DroMel_CAF1
Location 12,815,322 – 12,815,421
Length 99
Max. P 0.600982
window7972

overview

Window 2

Location 12,815,322 – 12,815,421
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.45
Mean single sequence MFE -35.00
Consensus MFE -26.39
Energy contribution -26.28
Covariance contribution -0.11
Combinations/Pair 1.31
Mean z-score -1.49
Structure conservation index 0.75
SVM decision value 0.14
SVM RNA-class probability 0.600982
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12815322 99 - 27905053
AAGUCCAUCGAGAUAUUUUAGCUGGGGAAGCACCUGUAGUAUAUACUCGCGGG---------------------GUCCUUGGCCCCCGAAAACUGUGCGGAUGCCAGGAUUCCCCAUGCA
....................(((((((((...((((..(((((...(((.(((---------------------((.....))))))))....)))))......)))).))))))).)). ( -35.50)
>DroGri_CAF1 324347 120 - 1
CACCCCGUCGAGGAACUUCAGAUUGGGUAGCACCUGGAGUAUAUAUUCCCGGAAAUAGGAGGCGGAUGUGGAUUUGCCUUGACCCUUGAAGACUGUCUGAAUUCCCGGAUUGCCCAUGCA
.......(((.((((.(((((((.((((....((.(((((....))))).))......(((((((((....))))))))).)))).........))))))))))))))..(((....))) ( -36.70)
>DroSec_CAF1 190202 99 - 1
AAGUCCAUCGAGGUAUUUUAGCUGGGGAAGCACCUGUAGUAUAUACUCGCGGG---------------------GUAUUUGGCCCCCGAAAACAGUGCGGAUGCCAGGAUUUCCCAUGCA
((((((.....)).))))..(((((((((...((((..((((.((((((.(((---------------------((.....)))))))).....)))...)))))))).))))))).)). ( -30.70)
>DroSim_CAF1 192092 99 - 1
AAGUCCAUCGAGGUAUUUUAGCUGGGGAAGCACCUGUAGUAUAUACUCGCGGG---------------------GUCCUUGGCCCCCGAAAACUGUGCGGAUGCCAGGAUUUCCCAUGCA
((((((.....)).))))..(((((((((...((((..(((((...(((.(((---------------------((.....))))))))....)))))......)))).))))))).)). ( -32.90)
>DroEre_CAF1 198839 99 - 1
AAGUCCAUCGAGAUAUUUUAGCUGGGGAAGCACCUGCAGUAUAUACUCGCGGG---------------------GUCCUUGGCCCCCGAAAACAGUGCGGAUGCCAGGAUUCCCCAUGCA
....................((((((((....((((((((....))).)))))---------------------(((((.(((..(((.........)))..)))))))))))))).)). ( -37.10)
>DroYak_CAF1 191330 99 - 1
AAGUCCAUCAAGAUAUUUUAGCUGGGGAAGCACCUGCAGUAUAUACUCGCGGG---------------------GUCCUUGGCCCCCGAAAACUGUGCGGAUGCCAGGAUUCCCCAUGCA
....................((((((((....((((((((....))).)))))---------------------(((((.(((..(((.........)))..)))))))))))))).)). ( -37.10)
>consensus
AAGUCCAUCGAGAUAUUUUAGCUGGGGAAGCACCUGUAGUAUAUACUCGCGGG_____________________GUCCUUGGCCCCCGAAAACUGUGCGGAUGCCAGGAUUCCCCAUGCA
....................(((((((((...((((((((....))).)))))........................((((((..(((.........)))..)))))).))))))).)). (-26.39 = -26.28 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:47 2006