| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,806,360 – 12,806,464 |
| Length | 104 |
| Max. P | 0.686030 |
| Location | 12,806,360 – 12,806,464 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.99 |
| Mean single sequence MFE | -18.93 |
| Consensus MFE | -11.40 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12806360 104 + 27905053 AAUAUAU--UUGCCCACAUCUAAUGAAUUUGAUUCCACUCCCUUGG------------CUUAGUAUAUAUGUAUAAUAUACCGCGUAAUCAGGGGUAAUGGAUUCGAUUCACAAACCC .......--..............((((((.((.((((..(((((((------------.(((((.(((((.....)))))..)).))))))))))...)))).))))))))....... ( -23.30) >DroSec_CAF1 181273 104 + 1 AAUAUAU--UUGCCCACAUCUAAUGAAUUUGAUUCCACUCCCUUGA------------CUAACUUUAUUUGUAUAAUAUACCGCAUAAUCAGGGAUAAUGGAUUCGAUUCACAAACCC .......--..............((((((.((.((((.(((((.((------------.((....((((.....)))).......)).)))))))...)))).))))))))....... ( -15.70) >DroSim_CAF1 183208 104 + 1 AAUAUAU--UUGCCCACAUCUAAUGAAUUUGAUUCCGCUCCCUUGA------------CUAACUUUAUUUGUAUAAUAUACCGCAUAAUCAGGGGUAAUGGAUUCGAUUCACAAACCC .......--..............((((((.((.((((..(((((((------------.((....((((.....)))).......)).)))))))...)))).))))))))....... ( -18.80) >DroEre_CAF1 189942 104 + 1 AAUAUAU--UUGCUCAGAUCUAAUGAAUUCGAUUCCACUCCCUCGG------------CUAACCAGAUUUGUAAAAUAUACCGCAUAAUCAGGGGUAAUGGAUUCGAUUCACAAGCUC .......--.......((.((..(((((.(((.((((..((((.((------------....)).(((((((..........))).)))).))))...)))).))))))))..)).)) ( -21.90) >DroYak_CAF1 180675 103 + 1 AAUAUAU--UUACCUAUAUCUAAUGAAUUUGAUUCCACCGGCUUGA------------CUAACUAGAUUUGUAAAAUA-ACCGCAUAAUCAGGGGUAAUGGAUUCGAUUCACAAACUC .......--..............((((((.((.(((((((......------------)...((.(((((((......-...))).)))).)))))...))).))))))))....... ( -12.80) >DroAna_CAF1 169766 109 + 1 AAUCAAUUGUUGGCCA---------GAUUUUAUAUCACUCCUGUGAAAGAUCAUAAAACCAACAAGCUAUAUAUAAUUUGUAGUACAAUCAAUGGUAAUGGCACCAAUUCACAAACCC ....(((((...((((---------((((((...((((....)))))))))).....((((....((((((.......))))))........))))..))))..)))))......... ( -21.10) >consensus AAUAUAU__UUGCCCACAUCUAAUGAAUUUGAUUCCACUCCCUUGA____________CUAACUAGAUUUGUAUAAUAUACCGCAUAAUCAGGGGUAAUGGAUUCGAUUCACAAACCC .......................(((((.(((.((((..(((((((..........................................)))))))...)))).))))))))....... (-11.40 = -12.32 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:46 2006