| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,804,447 – 12,804,558 |
| Length | 111 |
| Max. P | 0.521787 |
| Location | 12,804,447 – 12,804,558 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 77.60 |
| Mean single sequence MFE | -24.89 |
| Consensus MFE | -15.19 |
| Energy contribution | -14.92 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12804447 111 - 27905053 UCUUCUCAGCGCCAGGAAGAUAUAAGUCGGAUGUCUACCUGCUGCCAAAGAAAAUGGGUAGGUUCUUAGUUAAAAUAGCUAAGGAAAUCUUUGGACAAUUUAAAUUAA--UUU ......((((...(((.((((((.......)))))).)))))))(((((((...........((((((((((...))))))))))..)))))))..............--... ( -25.72) >DroSec_CAF1 179297 111 - 1 UCUUUUCAGCGCCAGGAAGAUAUAAGUCGGAUGUCUACCUGUUGCCCAAGAAAAUGGGUAGGUUCAUAGUUAAAAUAGCUAAGGAAAUCUUCGGAAAAUUUAAUUUAA--UUU (((((..(((..((((.((((((.......)))))).))))(((((((......)))))))................))))))))..((....)).............--... ( -25.70) >DroSim_CAF1 181229 111 - 1 UCUUCUCAGCGCCAGGAAGAUAUAAGUCGGAUGUCUACCUGUUGCCCAAGAAAAUGGGUAGGUUCUUAGUUAAAAUAGCUAAGGAAAUCUUCGGAUAAUUUAAUUUAA--UUU ............((((.((((((.......)))))).))))(((((((......))))))).((((((((((...)))))))))).(((....)))............--... ( -29.30) >DroEre_CAF1 187957 100 - 1 UCUUCUCAGCGCCAGGAAGAUAUAAGUCGGAUGUCUACCUGCUGCCAAAGAAAAUGGGUAGGUUAUUACAU-UGCUAGCUAUAUAAUUCUUGUAGUAAA------------UU .......(((..((((.((((((.......)))))).))))(((((..........)))))..........-.))).((((((.......))))))...------------.. ( -22.20) >DroYak_CAF1 178691 101 - 1 UCUUCUCAGCGCCAGGAAGAUAUAAGUCGGAUGUCUAUCUGCUGCCAAAGAAAAUGGGUAGGUUAUUCCUUAUUCUAGCUAACGAAAGCUAAGGAUAAU------------UU ..((((..(((.((((.((((((.......)))))).)))).)))...))))...(((........)))(((((((((((......)))).))))))).------------.. ( -23.30) >DroAna_CAF1 168027 105 - 1 UAUACUCGGCGCCAGGAAGGUACAAGUCGGAUGUCUACUUGCUGCCAAAGAAAAUGGGUAGGUUUAUAAUAUAUUUUAUAAACUAAAUC--------AUUUGUUUCAAACUUU .......((((((.....))).(((((.((....)))))))..))).....((((((...(((((((((......)))))))))...))--------))))............ ( -23.10) >consensus UCUUCUCAGCGCCAGGAAGAUAUAAGUCGGAUGUCUACCUGCUGCCAAAGAAAAUGGGUAGGUUCUUAGUUAAAAUAGCUAAGGAAAUCUUCGGAUAAUUUAAUUUAA__UUU .......(((..((((.((((((.......)))))).))))(((((..........)))))................)))................................. (-15.19 = -14.92 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:43 2006