Locus 4860

Sequence ID 3R_DroMel_CAF1
Location 12,759,541 – 12,759,642
Length 101
Max. P 0.972319
window7962

overview

Window 2

Location 12,759,541 – 12,759,642
Length 101
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 89.61
Mean single sequence MFE -27.53
Consensus MFE -22.65
Energy contribution -21.48
Covariance contribution -1.16
Combinations/Pair 1.21
Mean z-score -3.30
Structure conservation index 0.82
SVM decision value 1.69
SVM RNA-class probability 0.972319
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12759541 101 - 27905053
UAACAUUUUUGUUAACUGUUGCAAACAUUGCCUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCAGCAACAUAAAAAGCGAACGCCAGC-AGC
(((((....))))).((((((......((((.(((...((((.((..((((((((((((...))))))))))))))))))..))).))))....))))-)). ( -26.10)
>DroPse_CAF1 143437 101 - 1
CAACAUUUUGGUUAGCUGUUGCAAGCGUUGUGUUUAAUUGUUUGUUUUGGUCGUAAAAUCGGAUUUUAUGACCGGCAGCAUAAAAAGCUAGCCCAAAC-AAC
.(((((..((.((.((....)))).))..)))))...(((((((....(((((((((((...)))))))))))((((((.......))).))))))))-)). ( -31.30)
>DroSim_CAF1 136314 101 - 1
UAACAUUUUUGUUAACUGUUGCAAACAUUGCCUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCAGCAACAUAAAAAGCGAACGCCAGC-AGC
(((((....))))).((((((......((((.(((...((((.((..((((((((((((...))))))))))))))))))..))).))))....))))-)). ( -26.10)
>DroEre_CAF1 141369 101 - 1
UAACAUUUUUGUUAACUGUUGCAAACAUUGCCUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCACCAACAUAAAAAGCGAACACCAGC-AGC
(((((....))))).((((((((.....))).......(((((((((((((((((((((...))))))))))))..........)))))))))..)))-)). ( -25.30)
>DroAna_CAF1 121812 102 - 1
UAACAUUUUUGUUAACUGUUGCAAGCAUUGAGUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCAGCAACAUAAAAAGCCAGCCCCAGCCAGC
(((((....)))))..(((((((((((...........)))))....((((((((((((...))))))))))))))))))......((..((....))..)) ( -25.10)
>DroPer_CAF1 150179 101 - 1
CAACAUUUUGGUUAGCUGUUGCAAGCGUUGUGUUUAAUUGUUUGUUUUGGUCGUAAAAUCGGAUUUUAUGACCGGCAGCAUAAAAAGCUAGCCCAAAC-AAC
.(((((..((.((.((....)))).))..)))))...(((((((....(((((((((((...)))))))))))((((((.......))).))))))))-)). ( -31.30)
>consensus
UAACAUUUUUGUUAACUGUUGCAAACAUUGCCUUUAAUUGUUUGUUUUGGUCGUAAAAUCAAAUUUUAUGACCAGCAACAUAAAAAGCGAACCCCAGC_AGC
.......((((((...(((((((((((...........)))))....((((((((((((...)))))))))))))))))).....))))))........... (-22.65 = -21.48 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:37 2006