Locus 4854

Sequence ID 3R_DroMel_CAF1
Location 12,728,528 – 12,728,618
Length 90
Max. P 0.549073
window7950

overview

Window 0

Location 12,728,528 – 12,728,618
Length 90
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 79.96
Mean single sequence MFE -24.87
Consensus MFE -18.07
Energy contribution -19.22
Covariance contribution 1.15
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.73
SVM decision value 0.03
SVM RNA-class probability 0.549073
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12728528 90 - 27905053
ACGAUGGCAACGGCCAUGCCGAUGUAGCUGGA------GCUGGAGAU------GGAGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGGGA
......(((.((((...)))).)))..((((.------..(((((((------.......((..(((....))).))..........))))))).))))... ( -22.83)
>DroSec_CAF1 104057 102 - 1
ACGAUAGCAACGGCCAUGCCGAUGUAGCUGGAGAUGGAGCUGGAGAUGGAGCUGGAGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA
......(((.((((...)))).))).(((((......((((........))))((((((.((..(((....))).))..........))))))..))))).. ( -28.60)
>DroSim_CAF1 105504 78 - 1
ACGAUGGCAACGGCCAUGCCGAUGUAGCUGG------------------------AGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA
......(((.((((...)))).))).(((((------------------------.....((..(((....))).))......(((.....))).))))).. ( -23.80)
>DroEre_CAF1 109996 84 - 1
ACGACGGA------------GCUGGAGCUGGA------GAUGGAGAAGGCGAUGGCGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA
........------------(((((...((((------(((.......((....))....((..(((....))).))..........))))))).))))).. ( -20.90)
>DroYak_CAF1 99684 96 - 1
ACGAUGGCAACGGCCAUGCCGAUGUAGCUGGA------GCUGGAGAUGGCGAAGGAGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA
......(((.((((...)))).))).(((((.------(((......)))...((((((.((..(((....))).))..........))))))..))))).. ( -28.20)
>consensus
ACGAUGGCAACGGCCAUGCCGAUGUAGCUGGA______GCUGGAGAUGG_G__GGAGAUGGCGAUGGGAACCCAAGCAUAAAAUAGAAUUUCUAACCAGCGA
......(((.((((...)))).))).(((((.............................((..(((....))).))......(((.....))).))))).. (-18.07 = -19.22 +   1.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:26 2006