Locus 4853

Sequence ID 3R_DroMel_CAF1
Location 12,723,119 – 12,723,219
Length 100
Max. P 0.554844
window7949

overview

Window 9

Location 12,723,119 – 12,723,219
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.99
Mean single sequence MFE -21.78
Consensus MFE -14.67
Energy contribution -14.42
Covariance contribution -0.25
Combinations/Pair 1.05
Mean z-score -1.14
Structure conservation index 0.67
SVM decision value 0.04
SVM RNA-class probability 0.554844
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12723119 100 + 27905053
--------ACCGC--CCC-----UUCGGCG---AGCCGUGUCUUUGCC--ACUGACACUAAUUGGUUGCUUUAUGGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA
--------..(((--(..-----...))))---.((((((.....((.--((..(......)..)).))..)))))).((((((((.(((((((......))))))).))))..)))).. ( -24.20)
>DroVir_CAF1 110283 101 + 1
G----CU-CGCGCUCGUC-----UUCGGU------U-UAGUCUUCUCU--ACUGACACUAAUUGGCUGCUUUAUAGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA
(----(.-...)).....-----.(((((------.-(((......))--)..((((.(((((((..(((....))))))))))...(((((((......)))))))...))))))))). ( -17.90)
>DroGri_CAF1 163124 107 + 1
UUCCCCU-UGGGCUCGUC-----UUCGGU------U-UUGCCUUCUCCUGACUGACACUAAUUGGCUGCUUUAUAGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA
.......-.((((....(-----....).------.-..)))).........(((((.(((((((..(((....))))))))))...(((((((......)))))))...)))))..... ( -21.30)
>DroWil_CAF1 129810 99 + 1
--------AUCGU--CCA-----AUCGGUG---G-AAAAGACUUGAAC--GCUGACACUAAUUGGUUGCUUUAUGGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA
--------.....--...-----.((((((---.-.((((........--........(((((((..(((....))))))))))...(((((((......)))))))))))..)))))). ( -21.20)
>DroMoj_CAF1 117345 103 + 1
U----CUCCCCGCUCCUC-----UUCGGU------UUUUGUCUUCUCC--ACUGACACUAAUUGGCUGCUUUAUAGCCCAGUUAAAUCGUAAAACUGAAAUUUUAUGCAUUGUCACUGAA
.----......((.....-----((((((------(((((((......--...)))).(((((((..(((....))))))))))......))))))))).......))............ ( -19.00)
>DroAna_CAF1 84282 108 + 1
--------AGCCC--CUCCUCUAUCCAGCGAGAAGCAGUGUCUUUGGC--AGUGACACUAAUUGGUUGCUUUAUGGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA
--------.((..--(((((......)).)))..))...........(--(((((((.(((((((..(((....))))))))))...(((((((......)))))))...)))))))).. ( -27.10)
>consensus
________AGCGC__CUC_____UUCGGU______U_UUGUCUUCUCC__ACUGACACUAAUUGGCUGCUUUAUAGCCCAGUUAAAUCGUAAAACUCAAAUUUUAUGCUUUGUCACUGAA
....................................................(((((.(((((((..(((....))))))))))...(((((((......)))))))...)))))..... (-14.67 = -14.42 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:25 2006