| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,708,331 – 12,708,430 |
| Length | 99 |
| Max. P | 0.892470 |
| Location | 12,708,331 – 12,708,430 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 85.26 |
| Mean single sequence MFE | -33.80 |
| Consensus MFE | -29.78 |
| Energy contribution | -29.78 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12708331 99 - 27905053 GUUUAUCUUGCGAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCAAU--CACAUUUGUCAGAUACUUUCGA---------AG ...........(((((((((((((..((.((......)).)))))))..))))))))(((((..((((((((((.--.....))))))))))..)))))---------.. ( -37.50) >DroSec_CAF1 84101 101 - 1 GUUUAUCUUGCGAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGUCAGAUACUUUCGA---------AG ...........(((((((((((((..((.((......)).)))))))..))))))))(((((..(((((((((((......)))))))))))..)))))---------.. ( -37.10) >DroSim_CAF1 85268 101 - 1 GUUUAUCUUGUGAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGUCAGAUACUUUUGA---------AG ...........(((((((((((((..((.((......)).)))))))..))))))))(..((..(((((((((((......)))))))))))..))..)---------.. ( -35.50) >DroEre_CAF1 89324 101 - 1 GUUUAUCUUGCAAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGUCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGUCAGAUACUUUCGA---------AG .........((...(((((((((.((((.......)))).)))).))))).))....(((((..(((((((((((......)))))))))))..)))))---------.. ( -30.80) >DroYak_CAF1 78631 101 - 1 CUUUAUCUCGCGAUGGCUGCGGCAAGGCAAAUCGGGUUUAGCUGUCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGCCAGAUACUUUCGA---------AG ...........(((((((((((((..((.((......)).)))))))..))))))))(((((..(((((((((((......)))))))))))..)))))---------.. ( -37.10) >DroAna_CAF1 70892 100 - 1 GUGUAUCUUUU-----UUGUGGCAAAGC-----GAGUUUAUCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCGAACAGGCAUUCAGUAGAUACUUUUGAACGCCUCGCAG (((.((((...-----..(((((..(.(-----(.((......)))).)..)))))...)))).)))...((((...(((.(((((.........))))).))))))).. ( -24.80) >consensus GUUUAUCUUGCGAUGGCUGCGGCAAAGCAAAUCGGGUUUAGCUGCCGGUCGGCCAUCUUGGAUUUAUCUGGCAAGCGCACAUUUGUCAGAUACUUUCGA_________AG ...........(((((((((((((((((.......))))...)))))..))))))))(((((..(((((((((((......)))))))))))..)))))........... (-29.78 = -29.78 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:19 2006