Locus 4849

Sequence ID 3R_DroMel_CAF1
Location 12,708,063 – 12,708,178
Length 115
Max. P 0.581806
window7942

overview

Window 2

Location 12,708,063 – 12,708,178
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 83.12
Mean single sequence MFE -30.51
Consensus MFE -18.79
Energy contribution -20.63
Covariance contribution 1.84
Combinations/Pair 1.08
Mean z-score -1.89
Structure conservation index 0.62
SVM decision value 0.10
SVM RNA-class probability 0.581806
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12708063 115 - 27905053
ACCUGGCCUCAGAGCCCGUAUCUGAGGCCAAGAAACCGCACUUAUUUAUUGAAACUCGGUUGGCCUCUUCGGGACUCUAGACCGGGGAUCUCUAUACUCAUAGAUAAUACCCCGA
....((.((.((((((((.....(((((((....((((...(((.....)))....)))))))))))..)))).)))))).))((((...(((((....))))).....)))).. ( -40.90)
>DroSec_CAF1 83831 115 - 1
ACCUGGGCGCAGAGCCCGUAUCUGAAGCCAAAAAACCACACUUAUUUAUCGAAACUCGGUUGGCCUCUUCGGGACUCUAGACCGGGGAUCUCUAUACUCAUAGAUAAUACCCCGA
.....(((..((((((((.....((.((((.................((((.....)))))))).))..)))).)))).).))((((...(((((....))))).....)))).. ( -31.02)
>DroSim_CAF1 84997 115 - 1
ACCUGGCCGCAGAGCCCGUAUCUGAGUCCAAAAAACCACACUUAUUUAUCGAAACUCGGUUGGCCUCUUCGGGACUCUAGACCGGGGAUCUCUAUACUCAUAGAUAAUACCCCGA
..(((((((.((((.(((...((((((..........................)))))).))).)))).)))....))))..(((((...(((((....))))).....))))). ( -30.67)
>DroEre_CAF1 89058 111 - 1
ACCGAGG--UAGAGCCCGUACUUGCAGCU-AAAAACCUAACUUAUUUAUCCUAACUCGGUUGGCCUCUUCGGGAAUCGAAACCGGGGAAC-CUAUACUCAUAGAUAAUGCCCUGA
.((((((--.((.(((.((....))....-...((((....................)))))))))))))))..........(((((...-((((....))))......))))). ( -24.05)
>DroYak_CAF1 78373 103 - 1
ACCGAGUCUCAGAGCCCA------------AAAACCCUAACUUAUUUAUCCAAACUCGGUUGUCCUCUUCGGGACUCGAAUCCGGGGACCUCUAUACUCAUAGAUAACACCCUGA
..((((((((((((..((------------...(((.....................)))))..))))..))))))))....(((((...(((((....))))).....))))). ( -25.90)
>consensus
ACCUGGCCGCAGAGCCCGUAUCUGAAGCCAAAAAACCACACUUAUUUAUCGAAACUCGGUUGGCCUCUUCGGGACUCUAGACCGGGGAUCUCUAUACUCAUAGAUAAUACCCCGA
...........(((((((.....((.(((....((((....................))))))).))..)))).))).....(((((...(((((....))))).....))))). (-18.79 = -20.63 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:18 2006