Locus 4841

Sequence ID 3R_DroMel_CAF1
Location 12,667,441 – 12,667,544
Length 103
Max. P 0.982045
window7931

overview

Window 1

Location 12,667,441 – 12,667,544
Length 103
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 78.68
Mean single sequence MFE -22.02
Consensus MFE -11.12
Energy contribution -11.56
Covariance contribution 0.44
Combinations/Pair 1.27
Mean z-score -2.62
Structure conservation index 0.50
SVM decision value 1.90
SVM RNA-class probability 0.982045
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12667441 103 - 27905053
UUGCUUUGCUGUAUUUGACUUAGUAAUGUCAUUAGCAUA----AGUUCAUUUGAAAUCCACUUCCAA-AAAUGUUCUGAUUAAACUAAGCA--------UUCCUCAGCAGAGCACU
.((((((((((....((.((((((.((((.....)))).----((..((((((((......)))...-)))))..))......))))))))--------.....)))))))))).. ( -27.00)
>DroSec_CAF1 43494 103 - 1
UAGCUUUGCUGUAUUUGACUUAGUAAUGUCGUUGGCAUA----AGUUAAUUUAAAAUCCACUUCCAA-AAAUGUUGUGAUUAAACUCAGCA--------UUCCUCAGCAGAGCCCU
..(((((((((...((((((((....(((.....)))))----))))))..................-.(((((((.(......).)))))--------))...)))))))))... ( -25.50)
>DroSim_CAF1 44121 103 - 1
UAGCUUUGCUGUAUUUAACUUAGUAAUGUCGUUGGCAUA----AGUUAAUUUAAAAACCACUUCCAA-AAAUGUUCUGAUUAAACUCAGCA--------UUCCUCAGCAGAGCACU
..(((((((((...((((((((....(((.....)))))----))))))..................-.((((..((((......))))))--------))...)))))))))... ( -23.80)
>DroEre_CAF1 47315 114 - 1
UUACCUUGCUGCAU-UGACUUAAAAAUGUCGUUAACAUACAGAGGUUCAUAUGAAAUCCACUUCCUA-AAAUGUUCCGAUGAAAUUCAACAUUUCAAAAUUCCUCAGCAAAACACU
.....(((((....-.(((........)))...........(((((((....)))............-(((((((..((......))))))))).......)))))))))...... ( -16.10)
>DroYak_CAF1 36224 105 - 1
UU-GCUUGCUACAU-CGACCUUG-UAUGUCGUUAACAUACAUACGUUUUUAUAAAAUCCACUUCCAAAAAAUGUUCUGAUAACAUUCAACA--------UUCCUCAGCAGAGCACU
.(-(((((((....-.(((..((-(((((.....)))))))...)))......................(((((..(((......))))))--------))....)))).)))).. ( -17.70)
>consensus
UUGCUUUGCUGUAUUUGACUUAGUAAUGUCGUUAGCAUA____AGUUAAUUUAAAAUCCACUUCCAA_AAAUGUUCUGAUUAAACUCAGCA________UUCCUCAGCAGAGCACU
..(((((((((.....((((.....((((.....)))).....))))........................((((..(......)..)))).............)))))))))... (-11.12 = -11.56 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:08 2006