Locus 4839

Sequence ID 3R_DroMel_CAF1
Location 12,658,644 – 12,658,738
Length 94
Max. P 0.940439
window7929

overview

Window 9

Location 12,658,644 – 12,658,738
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 91.63
Mean single sequence MFE -25.80
Consensus MFE -18.79
Energy contribution -19.87
Covariance contribution 1.08
Combinations/Pair 1.06
Mean z-score -3.13
Structure conservation index 0.73
SVM decision value 1.29
SVM RNA-class probability 0.940439
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12658644 94 - 27905053
AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUUGUAACCAUGAUACCAUGUUGUGCUGUGAAAGUAUGUUUAUA
.(((((((.(((((((((..(((((((..(((((........)))))(((((.........))))))))))))..)).))))))).))))))). ( -26.60)
>DroSec_CAF1 34994 94 - 1
AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUUGUAACCAUGUUACCAUGUUGUGCUGUGAAAGUAUGUUUAUA
.(((((((.(((((((((..(((((((...(((.(((((....))))))))..(((((...))))))))))))..)).))))))).))))))). ( -28.30)
>DroSim_CAF1 35559 94 - 1
AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUUGUAACCAUGUUACCAUGUUGUGUUGUGAAAGUAUGUUUAUA
.(((((((.(((((((((..(((((((...(((.(((((....))))))))..(((((...))))))))))))..)).))))))).))))))). ( -25.40)
>DroEre_CAF1 38527 86 - 1
AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGGGUAGUGUUUGUAGCCA--------UGUAAUGCUGUGAAAGUAUAUUUAUA
.(((((((.(((((((((((..(((((..((((.((((......))))....))))..))--------)))..)))).))))))).))))))). ( -23.00)
>DroYak_CAF1 27380 86 - 1
AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUCGUAACCA--------UGUUGUGCUGUGAAAGUAUGUUUAUA
.(((((((.(((((((((..(((((((..(((..(((((....))))).....)))..))--------)))))..)).))))))).))))))). ( -25.70)
>consensus
AAUGAAUGGAUUUUCGAGUGCGACAUGAAUGCAUCUAUAACUGUGUAGUGUUUGUAACCAUG_UACCAUGUUGUGCUGUGAAAGUAUGUUUAUA
.(((((((.((((((((((((((((((...(((.(((((....))))))))...............))))))))))).))))))).))))))). (-18.79 = -19.87 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:06 2006