Locus 4837

Sequence ID 3R_DroMel_CAF1
Location 12,652,358 – 12,652,467
Length 109
Max. P 0.799970
window7926

overview

Window 6

Location 12,652,358 – 12,652,467
Length 109
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 78.03
Mean single sequence MFE -31.40
Consensus MFE -18.22
Energy contribution -20.00
Covariance contribution 1.78
Combinations/Pair 1.22
Mean z-score -1.86
Structure conservation index 0.58
SVM decision value 0.61
SVM RNA-class probability 0.799970
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12652358 109 - 27905053
CACUGCAAAACCGCAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGGGUCUCGGAUCCUGGGACUCUGUCCAUUUUCCUCUCGGCC----ACCGGCCAUUCAUAUUGAAUGGCCA
...(((......)))...(((....(((((.((..........(((((((((...))))))))).)).)))))......)))..----...((((((((.....)))))))). ( -30.90)
>DroSec_CAF1 28815 109 - 1
CACUGCAAAACCGCAAAUCCGUUUCGAAUGCGCCCUAAUUAUCGGGUCCCGGAUCCUGGGACUCUGGACAUUUUCCCCCCGGCC----ACCGGCCAUUCAUAUUGACUGGCCA
...(((......))).............((.(((.........(((((((((...))))))))).(((.....)))....))))----)..(((((.((.....)).))))). ( -33.30)
>DroSim_CAF1 26823 109 - 1
CACUGCAAAACCGCAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGGGUCCCGGAUCCUGGGACUCUGGCCAUUUUCCCCUCGGCC----ACCGGCCAUUCAUAUUGAAUGGCCA
...........((((..((......)).))))...........(((((((((...)))))))))(((((...........))))----)..((((((((.....)))))))). ( -38.50)
>DroYak_CAF1 20823 113 - 1
CACCGCAAAACCGCAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGGGUCCCGGAUCCUGGGACUCUGGCCAUUUUCCCCUCGGCCACCGGCCGGCCAUUCAUAUUGAAUGGCCA
..(((......((((..((......)).))))...........(((((((((...)))))))))(((((...........))))).)))..((((((((.....)))))))). ( -40.80)
>DroAna_CAF1 16771 95 - 1
AACCGCA-AACCACAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGG--CCCGGGUCCU------CUUGGC------UUCCUGGCU---GGCCGGACAUUCAUAUCGAAUGGCCA
....((.-.........((((....((......))......((((--((.(((.((.------...)).------.))).))))---)).))))(((((.....))))))).. ( -23.50)
>DroPer_CAF1 30865 92 - 1
GACCGCA--ACCACAAAUCCCUUUCCAAUGUGCUCUAAUUAUCGGUUC---GGUCCUCGGGUGCUGG------------UGCCC----AUUGAGCCUUCCCAUCGAAUGGCCG
(((((.(--(((...............................)))))---))))...(((((....------------)))))----...(.((((((.....))).)))). ( -21.38)
>consensus
CACCGCAAAACCGCAAAUCCGUUUCGAAUGCGCUCUAAUUAUCGGGUCCCGGAUCCUGGGACUCUGGCCAUUUUCCCCUCGGCC____ACCGGCCAUUCAUAUUGAAUGGCCA
...((((.....((......))......))))...........(((((((((...)))))))))...........................((((((((.....)))))))). (-18.22 = -20.00 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:03 2006