| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,648,662 – 12,648,759 |
| Length | 97 |
| Max. P | 0.791599 |
| Location | 12,648,662 – 12,648,759 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.65 |
| Mean single sequence MFE | -34.53 |
| Consensus MFE | -17.40 |
| Energy contribution | -16.48 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791599 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12648662 97 - 27905053 GACCAGAAAUUUGUGUAUUUUAAUUAAAAAUGCACCAACGAUGCCGAGCAGCUU--CAUCUGCUUAUUAAUUAG--------------GAGGAGUCCG----UCUGGUCGUUGGCUC (((((((.....(((((((((.....)))))))))..........((((((...--...))))))........(--------------((....))).----)))))))........ ( -27.80) >DroPse_CAF1 22710 115 - 1 GCACAGAAAUUUGUGUAUUUUAAUUAAAAAUGCGCCAGCGCUGGCAAGCGGCUUCUCAUCUGCUUAUUAAUUAGGCGUCGCUUCGGCGGAGGAGUCGGCGACUCUGGG-GUUGCCU- ((.(((......(((((((((.....))))))))).....)))))....((((((((....(((((.....)))))..(((....)))))))))))(((((((....)-)))))).- ( -47.70) >DroSec_CAF1 25092 97 - 1 GACCAGAAAUUUGUGUAUUUUAAUUAAAAAUGCACCAACGAUGCCGAGCAGCUU--CAUCUGCUUAUUAAUUAG--------------GAGGAGUCGG----UCUGGUCGUUGGCUG (((((((.....(((((((((.....)))))))))...((((.((((((((...--...)))))).((......--------------)))).)))).----)))))))........ ( -30.60) >DroEre_CAF1 28406 96 - 1 GACCAGAAAUUUGUGU-UUUUAAUUAAAAAUGCGCCAACGAUGCCGAGCAGCUU--CAUCUGCUUAUUAAUUAG--------------GAGGAGUCGG----UCUGGUCGUUGGCUC ............((((-((((....))))))))(((((((((((((....((((--(..(((.........)))--------------..))))))))----)...))))))))).. ( -28.10) >DroAna_CAF1 13332 100 - 1 GCACAGAAAUUUGUGUAUUUUAAUUAAAAACACGCCAACGAUGCCGAGCAGCUU--CAUCUGCUUAUUAAUUAG--------------GAGGAGUCGGCGUCUCUGGUCGUUGGCA- ((((((....)))))).................(((((((((...((((((...--...))))))........(--------------(((..(....)..)))).))))))))).- ( -32.10) >DroPer_CAF1 27441 109 - 1 GCACAGAAAUUUGUGUAUUUUAAUUAAAAAUGCGCCAGCGCUGGCAAGCGGCUUCUCAUCUGCUUAUUAAUUAGGCGUCGCUUCGGCGGAGGAGUCGGCGACUCU-------GCCU- ((.(((......(((((((((.....))))))))).....)))))....((((((((....(((((.....)))))..(((....)))))))))))((((....)-------))).- ( -40.90) >consensus GAACAGAAAUUUGUGUAUUUUAAUUAAAAAUGCGCCAACGAUGCCGAGCAGCUU__CAUCUGCUUAUUAAUUAG______________GAGGAGUCGG____UCUGGUCGUUGGCU_ ............(((((((((.....))))))))).......(((((((((........)))))).........................(((.........))).......))).. (-17.40 = -16.48 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:00 2006