| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,641,715 – 12,641,807 |
| Length | 92 |
| Max. P | 0.512781 |
| Location | 12,641,715 – 12,641,807 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.16 |
| Mean single sequence MFE | -23.42 |
| Consensus MFE | -14.37 |
| Energy contribution | -14.90 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12641715 92 + 27905053 ----------------------CUGGC-AU-UUUUUGCACGCACUGCAAACACGAGGGUGUGAUAAGACAAAAUACCCGACAUAAAUGUGAAAAAUAUAUGGCCAAAAGUGAAAAG---- ----------------------.((((-..-..((((((.....)))))).....((((((...........))))))..((((.((.......)).))))))))...........---- ( -19.20) >DroVir_CAF1 7715 106 + 1 AAAC--GAAG------ACGAGGUCGCA-AU-UUUUUGCACGCACUGCAAACACGGGGGUGUGAUAAGACAAAAUACCCGCCGUAAAUGUGAAAUAUAUAUGGCCAGAAGUUAAAAG---- ....--...(------((..(((((((-(.-...)))).......(((...((((((((((...........)))))).))))...)))...........))))....))).....---- ( -25.40) >DroGri_CAF1 41391 112 + 1 CGAC--AAGGAUGCGUACGAGGUCGGAUAU-UUUUUGCACGCACUGCAAAGACGAGGGUGUGAUAAGACAAAAUACCAGCCAUAAAUGUGAAAAAUAUAUGGCCAGAAGU-AAAAG---- ((((--..(........)...)))).....-((((((((.....))))))))....(((((...........))))).((((((.((.......)).)))))).......-.....---- ( -22.60) >DroWil_CAF1 34625 106 + 1 --ACUUUGGG------AAGGCGACGGC-AU-UUUUUGCACGCACUACAAACACGAGGGUGUGAUAAGACAAAAUACCCGCCAUAAAUGUGAAAAAUAUAUGGCCAAAAGUUAAAAG---- --((((((((------...(((...((-(.-....))).))).((....((((....))))....))........)))((((((.((.......)).))))))..)))))......---- ( -24.60) >DroMoj_CAF1 16941 106 + 1 UAAC--AAGG------ACGAAGACGAA-AUAUUUUUGCACG-ACUGCAAACACGGGGGUGUGAUAAGACAAAAUACCCGCCAUAAAUGUGAAAAAUAUAUGGCCAGGAGUCGGGAG---- ....--...(------.((((((....-...))))))).((-(((.(........((((((...........))))))((((((.((.......)).))))))..).)))))....---- ( -25.10) >DroPer_CAF1 20232 102 + 1 ----------------ACGGAGACGGC-AU-UUUUUGCACGCACUGCAAACACGAGGGUGUGAUAAGACAAAAUACCCGACAUAAAUGUGAAAAAUAUAUGGCCAAAACUGAAAAGGGCA ----------------.((....))((-((-((((((((.....)))))).....((((((...........)))))).....))))))............(((....((....))))). ( -23.60) >consensus __AC___AGG______ACGAAGACGGA_AU_UUUUUGCACGCACUGCAAACACGAGGGUGUGAUAAGACAAAAUACCCGCCAUAAAUGUGAAAAAUAUAUGGCCAAAAGUGAAAAG____ .................................((((((.....)))))).....((((((...........))))))((((((.((.......)).))))))................. (-14.37 = -14.90 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:55 2006