| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,631,755 – 12,631,856 |
| Length | 101 |
| Max. P | 0.995103 |
| Location | 12,631,755 – 12,631,856 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 72.88 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.30 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.38 |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.995103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12631755 101 - 27905053 AGUUUCCUGCGUCGCUCAAACUGCCCCAAAAGGCGAUCAUCGACGCGAUAAGGCAGCGCGUGAU--AUAUAUAUUUUAUGUCAUGUACUCUGCCAAAACCAUU-------------- .((((..(((((((.......((((......)))).....)))))))....(((((.(((((((--(((.......))))))))))...))))).))))....-------------- ( -33.40) >DroPse_CAF1 4868 109 - 1 AGUUUU-CGUGUCGGUUAAACUGUCCCA-AAGGCGAUCAUCGACGCGAUAAGGCAACAUUUGAA------AUAUUUUAUUUCAUAUGCUGUACGAAAAAAAUUCUCCCAAUACAUAA .....(-(((((((((.....((((...-..))))...))))))))))....(((.(((.((((------(((...))))))).))).))).......................... ( -23.30) >DroSec_CAF1 8137 101 - 1 AGUUUCCUGCGUCGCUCAAACUGCCCCAAAAGGCGAUCAUCGACGCGAUAAGGCAGCGCGUGAU--AUAUAUAUUUUAUGUCAUAUGCGCUGCCAAAACCAUU-------------- .((((..(((((((.......((((......)))).....)))))))....(((((((((((((--(((.......))))))))..)))))))).))))....-------------- ( -38.80) >DroSim_CAF1 5979 101 - 1 AGUUUCCUGCGUCGCUCAAACUGCCCCAAAAGGCGAUCAUCGACGCGAUAAGGCAGCGCGUGAU--AUAUAUAUUUUAUGUCAUAUGCGCUGCCAAAACAAUU-------------- .((((..(((((((.......((((......)))).....)))))))....(((((((((((((--(((.......))))))))..)))))))).))))....-------------- ( -39.70) >DroMoj_CAF1 4855 95 - 1 AGUUUC-GGCG----CUAAACUGGCCCCAAAGACGAUCAUCGAUGCGAUAAGGCACCAUUCCGAGCAUA-AUAUUCCACUACAUAUGAG-UGCAGAAACAAA--------------- .(((((-.(((----((....((..........((.....))((((.....((.......))..)))).-...........))....))-))).)))))...--------------- ( -18.10) >DroPer_CAF1 9471 109 - 1 AGUUUU-UGUGUCGGUUAAACUGUCCCA-AAGGCGAUCAUCGACGCGAUAAGGCAACAUUUGAA------AUAUUUUAUUUCAUAUGCUGUACGAAUAAAAUUCUCCCAAUCCAUAA .....(-(((((((((.....((((...-..))))...))))))))))....(((.(((.((((------(((...))))))).))).))).......................... ( -21.20) >consensus AGUUUC_UGCGUCGCUCAAACUGCCCCAAAAGGCGAUCAUCGACGCGAUAAGGCAGCACGUGAA__AUA_AUAUUUUAUGUCAUAUGCGCUGCCAAAACAAUU______________ .((((..(((((((.......((((......)))).....)))))))...))))............................................................... (-11.10 = -11.30 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:54 2006