Locus 4829

Sequence ID 3R_DroMel_CAF1
Location 12,623,787 – 12,623,907
Length 120
Max. P 0.599815
window7916

overview

Window 6

Location 12,623,787 – 12,623,907
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -30.20
Consensus MFE -29.48
Energy contribution -28.60
Covariance contribution -0.88
Combinations/Pair 1.13
Mean z-score -1.49
Structure conservation index 0.98
SVM decision value 0.13
SVM RNA-class probability 0.599815
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12623787 120 - 27905053
UCAGUAGUCAACUUCAUCAUCGCGAUGUCGAAGUGGUUUCUACCUGAACUAAUGAACACAACACGGCCACUUCAACAGCACCGACAACAAUGUCGCUGACACGUUGCAAUGCUCGAAAUU
............(((..(((.(((((((.(((((((((((.....)))....((....)).....))))))))..((((...((((....))))))))..))))))).)))...)))... ( -28.30)
>DroSec_CAF1 166 120 - 1
UCAGUAGUCAACUUAAUCAUCGCGAUGUCGGAGUGGUUUCUACCUGAACUAAUGAACACAACACGGCCACUUCAACAGCACCGACAACAAUGUCGCUGACACGUUGCAAUGCUCGAAAUU
.................(((.(((((((.(((((((((((.....)))....((....)).....))))))))..((((...((((....))))))))..))))))).)))......... ( -26.90)
>DroEre_CAF1 3147 120 - 1
UCAGAAGUCAACUUCAUCAUCGCGACGUCGGGGUGGCUUCUACCUGAACUAAUGAGCACAACACGGCCACUUCAACAGCACCGACAACAAUGUCGCUGACACGUUGCAAUGCUCGAAAUU
((.((((....))))..(((.(((((((.(((((((((......((..(....)..))......)))))))))..((((...((((....))))))))..))))))).)))...)).... ( -35.40)
>consensus
UCAGUAGUCAACUUCAUCAUCGCGAUGUCGGAGUGGUUUCUACCUGAACUAAUGAACACAACACGGCCACUUCAACAGCACCGACAACAAUGUCGCUGACACGUUGCAAUGCUCGAAAUU
.................(((.(((((((.(((((((((......((..(....)..))......)))))))))..((((...((((....))))))))..))))))).)))......... (-29.48 = -28.60 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:53 2006