| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,605,823 – 12,605,934 |
| Length | 111 |
| Max. P | 0.604646 |
| Location | 12,605,823 – 12,605,934 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 83.71 |
| Mean single sequence MFE | -33.95 |
| Consensus MFE | -25.20 |
| Energy contribution | -25.66 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12605823 111 - 27905053 CUUAAGUGAAUUGCCGGUGUUCCCCGCGAGGUUUCAGCCAUUUAAUGAGCUGCUAUUGCCCGGCAAUGUGCCUCGCGUCAGGAGUUCAAUGACGUAAUGAAUAUCGACAUU ...........((.((((((((...(((((((..(((((((...))).)))).((((((...)))))).)))))))((((.........)))).....)))))))).)).. ( -33.50) >DroSec_CAF1 88370 109 - 1 CUUAAGUGAAUUGCCGGUUUUCCCCGCGAGGUUUCAGCCAUUUAAUGAGCUGCUAUUGCACGGCAAUGUGCCUC--GUCAGCAGUUCAAUGACGUAAUGAAUAUCGGCAUU ...........(((((((.(((...(((.(((....)))..(((.(((((((((((.(((((....)))))...--)).))))))))).))))))...))).))))))).. ( -36.10) >DroSim_CAF1 88673 109 - 1 CUUAAGUGAAUUGCCUGUGUUCCCCGCGAGGUUUCAGUCAUUUAAUGAGCUGCUAUUGCACGGCAAUGUGCCUG--GUCAGCAGUUCAAUGACGUAAUGAAUAUCGGCAUU ...........((((.((((((.((....)).....(((((....(((((((((((((((((....)))))..)--)).)))))))))))))).....)))))).)))).. ( -37.50) >DroEre_CAF1 86924 109 - 1 CGUAAGUGAAUUGCUGGUAUUCCCCACCAGGUUUCAGCCAUUUAAUGAGCUGCUAUUGCACGGCAAUGUGCCUC--GACUGCAGUUCAAUGAUGUAAUGAAUAUCGGCAUU ...........(((((((((((.......(((....)))..(((.((((((((..(((...(((.....))).)--))..)))))))).)))......))))))))))).. ( -34.90) >DroYak_CAF1 87597 108 - 1 CGUAAGUGAAUUGCUGGUAUUCCCCGCGUGGUUUCAGCCAUUUAAUGAGCUGCUAUUGCACGGCAAUGUGCCUC--GUCAGCA-UUCAAUGAUGUAAUGAAUAUCGGCAUU ...........(((((((((((.(((.(..((..(((((((...))).))))..))..).)))..........(--((((...-.....)))))....))))))))))).. ( -32.70) >DroPer_CAF1 96537 108 - 1 CUAAAGUAAAUGGCUGCUGUCCCUCAUGAGAUUGCA-CCGUUUAAUGAGCUGGGAUUGCCACGGAACGGGCCUC--UUCUAGAUCCCACUGAUAUAAUGGGUAUGAGCCUU ...........((((((.(((.(....).))).)).-(((((..((.((.((((((((((.((...)))))...--.....))))))))).))..))))).....)))).. ( -29.00) >consensus CUUAAGUGAAUUGCCGGUGUUCCCCGCGAGGUUUCAGCCAUUUAAUGAGCUGCUAUUGCACGGCAAUGUGCCUC__GUCAGCAGUUCAAUGACGUAAUGAAUAUCGGCAUU ...........(((((((((((...(((.(((....)))..(((.(((((((((.......(((.....))).......))))))))).))))))...))))))))))).. (-25.20 = -25.66 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:42 2006