Locus 482

Sequence ID 3R_DroMel_CAF1
Location 1,799,032 – 1,799,123
Length 91
Max. P 0.718532
window779

overview

Window 9

Location 1,799,032 – 1,799,123
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 88.13
Mean single sequence MFE -22.60
Consensus MFE -15.50
Energy contribution -18.18
Covariance contribution 2.68
Combinations/Pair 1.05
Mean z-score -2.28
Structure conservation index 0.69
SVM decision value 0.39
SVM RNA-class probability 0.718532
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1799032 91 + 27905053
AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGCGUGGUCCUUCCUGGUCCAUCCGUGAAACAGCAAAAAUU
......((((((......))))))......(((((((.......(((....)))(((.((.....)).)))...))))))).......... ( -26.00)
>DroSec_CAF1 109690 81 + 1
AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGC----------CUGGUCCGUCCGUGAAACAGCAAAAAUU
......((((((......))))))......(((((((........((....))----------..((.....))))))))).......... ( -18.60)
>DroSim_CAF1 112565 91 + 1
AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGCGUGGUCCUUCCUGGUCCGUCCGUGAAACAGCAAAAAUU
......((((((......))))))......(((((((.......(((....))).((.((.....)).))....))))))).......... ( -25.30)
>DroEre_CAF1 105728 91 + 1
AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGCGUGGUCCUUCCUGGUCCGUCCGUGAAACAGCAAAAAUU
......((((((......))))))......(((((((.......(((....))).((.((.....)).))....))))))).......... ( -25.30)
>DroYak_CAF1 108725 76 + 1
AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGU---------------UGCUCCGUGGUCCUUCCUGGUCCGUCCGUGAAACAGCAAAAAUU
......((((((......))))))......((---------------((.(((((((.((.....)).)))..)).))..))))....... ( -17.80)
>consensus
AUUCAAAGCCAUUUUAAUGUGGCUCUUUCCGUUUCGCUCCUUUCCGCUGCUGCGUGGUCCUUCCUGGUCCGUCCGUGAAACAGCAAAAAUU
......((((((......))))))......(((((((.......(((....)))(((.((.....)).)))...))))))).......... (-15.50 = -18.18 +   2.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:16 2006