Locus 4817

Sequence ID 3R_DroMel_CAF1
Location 12,590,929 – 12,591,035
Length 106
Max. P 0.705867
window7896

overview

Window 6

Location 12,590,929 – 12,591,035
Length 106
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.15
Mean single sequence MFE -18.33
Consensus MFE -14.78
Energy contribution -14.75
Covariance contribution -0.03
Combinations/Pair 1.09
Mean z-score -1.05
Structure conservation index 0.81
SVM decision value 0.36
SVM RNA-class probability 0.705867
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12590929 106 - 27905053
ACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCAAACCGUGACAGUUUCGUUA-AAUGCUUUUUCUUUAUCUGACGUAUUCCUCUCCUUUCGGUUUUAUGC
.((((((((((.....))))..((((((((((((.........)))))..)))))))))-))))................((((..((.........))...)))). ( -17.70)
>DroVir_CAF1 80611 99 - 1
ACAUUUAUUGGGCAAUCCAAUCACGGACUUCACGUUCGCA-GUCGUGACAGUUUCGUUAAAAUGCUUUUUGUUUAAUUCU-------CUUCUCUUUUCAUUUCAUCU
.((((((((((.....))))).((((((((((((......-..))))).)).)))))..)))))................-------.................... ( -14.50)
>DroPse_CAF1 76385 106 - 1
ACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCA-GUCGUGACAGUUUCGUUAAAAUGUUUUUUCUCCAUCUGACUUAUUUCCAUUGUUGGGGUUUGUUUC
(((((((((((.....))))).((((((((((((.(....-).)))))..)))))))..)))))).............(((....(((((....)))))...))).. ( -22.00)
>DroGri_CAF1 78992 100 - 1
ACAUUUAUUGGGCAAUCCAAUCACGGAAUUCACGUUCGCA-GUCGUGACAGUUUCGUUAAAAUGCUUUUUGUUUAAUUUU------CCUUCCCUUUCCAUUUCAUUU
.((((((((((.....))))).((((((((((((......-..)))))..)))))))..)))))................------..................... ( -15.40)
>DroAna_CAF1 71707 101 - 1
ACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCGGGCCGUGACAGUUUCGUUAAAAUGCUUUUUCUUUAUCUGAAUUAUUUUUCU------GACUUCAUGU
.((((((((((.....))))).((((((((((((((....)).)))))..)))))))..)))))...........((.(((......))).------))........ ( -19.60)
>DroPer_CAF1 81703 106 - 1
ACAUUUAUUGGGCAAUCCAAUCACGAAACUCACGUCCCCA-GUCGUGACAGUUUCGUUAAAAUGUUUUUUCUCCAUCUGACUUAUUUCCUUUGUUGGUGUUUUUUUC
(((((((((((.....))))).((((((((((((.(....-).)))))..)))))))..))))))........((.(..((...........))..)))........ ( -20.80)
>consensus
ACAUUUAUUGGGCAAUCCAAUCACGGAACUCACGUCCCCA_GUCGUGACAGUUUCGUUAAAAUGCUUUUUCUUUAUCUGACUUAUUUCUUUUCUUUCGAUUUCAUUC
.((((((((((.....))))).((((((((((((.........)))))..)))))))..)))))........................................... (-14.78 = -14.75 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:34 2006