Locus 4816

Sequence ID 3R_DroMel_CAF1
Location 12,581,016 – 12,581,111
Length 95
Max. P 0.610093
window7895

overview

Window 5

Location 12,581,016 – 12,581,111
Length 95
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.32
Mean single sequence MFE -26.12
Consensus MFE -15.54
Energy contribution -16.15
Covariance contribution 0.61
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 0.59
SVM decision value 0.16
SVM RNA-class probability 0.610093
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12581016 95 + 27905053
CUUGACAACGUGCUAAGGCCAGCA-------------------CUGGCAACGCGAUAAGCGCAUAAAU--AUAGCCCCCC-GUAAUAAAUUCAGCGUCACAUUUGACGCCACGCCAU
.........(((((......))))-------------------)((((...(((.....)))......--..........-............((((((....))))))...)))). ( -24.20)
>DroPse_CAF1 71414 115 + 1
CUUGACAACGUGCUAAGGCCGGCAACGGCAAUGGCAACGGCAACUGGCAGCGCGAUAAGCGCAUAAAUUCAAAGCCCCCCGGUAAUAAAUUCAGCGUCACAUUUGACGCC--GCCAU
.(((....(((((((..((((....))))..)))).))).))).((((.((((.....))))...........(((....)))..........((((((....)))))).--)))). ( -42.20)
>DroGri_CAF1 73803 91 + 1
CUUGACAACGUGCUAAGGCCAACA------------------ACUGGCAAC--GAUAAGCGCAUAAAU--AAAACC-UCG-GUAAUAAAUUCAGCGUCACUUCUGACACUAC--CAG
.........(((((...((((...------------------..))))...--....)))))......--......-..(-((.........((.((((....)))).))))--).. ( -16.50)
>DroMoj_CAF1 83695 93 + 1
CUUGACAACGUGCUAAGGCCAACA------------------ACUGGCAACGCGAUAAGCGCAUAAAU--AAAGCC-CCA-GUAAUAAAUUCAGCGUCAGUUCUGACACUAC--CAA
.((((.....((((..(((.....------------------...(....)(((.....)))......--...)))-..)-)))......)))).((((....)))).....--... ( -17.40)
>DroAna_CAF1 67896 90 + 1
CUUGACAACGUGCUAAGGCCGGCA-------------------CUGGCAACGCGAUAAGCGCAUAAAU--AAACCCCCCA-GUAAUAAAUUCAGCGUCGCAUUUGACGCCGC-----
..(((.....((((...((((...-------------------.))))...(((.....)))......--.........)-)))......)))((((((....))))))...----- ( -19.30)
>DroPer_CAF1 76612 108 + 1
CUUGACAACGUGCUAAGGCCGGCAACGGC------AACGGCAACUGGCAGCGCGAUAAGCGCAUAAAUUCAAAGCCCCCC-GUAAUAAAUUCAGCGUCACAUUUGACGCC--GCCAU
..........((((...((((....))))------...))))..((((.((((.....))))..................-............((((((....)))))).--)))). ( -37.10)
>consensus
CUUGACAACGUGCUAAGGCCAGCA__________________ACUGGCAACGCGAUAAGCGCAUAAAU__AAAGCCCCCC_GUAAUAAAUUCAGCGUCACAUUUGACGCCAC__CAU
.........((((....(((((.....................)))))...((.....)))))).............................((((((....))))))........ (-15.54 = -16.15 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:33 2006