Locus 4814

Sequence ID 3R_DroMel_CAF1
Location 12,577,428 – 12,577,527
Length 99
Max. P 0.535480
window7893

overview

Window 3

Location 12,577,428 – 12,577,527
Length 99
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 83.31
Mean single sequence MFE -27.42
Consensus MFE -18.30
Energy contribution -18.63
Covariance contribution 0.34
Combinations/Pair 1.20
Mean z-score -1.88
Structure conservation index 0.67
SVM decision value 0.00
SVM RNA-class probability 0.535480
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12577428 99 + 27905053
AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGAAGUUCCCUUAUCUCG---------CUGCGGCCCUCGAUCCCCACUCCCCCUGGAAUCCCCAAUGCCAUU
....(((((((((((((((((........(((((....)))))..........(---------(....))..)))).))))))......(((.....))).))))))) ( -29.50)
>DroSec_CAF1 66098 99 + 1
AACAGAUGGCAGUGCGGUUGAAUAAAUUAAACUUAUCGGAGUUCCCUUAUCUCG---------CUGCGGCCCUCGAUCCCCAGUCCCCCUGGAAUCCCCAAUGCCAUU
....(((((((..(((((.((((((....(((((....)))))...)))).)))---------))))((.....(((..((((.....)))).))).))..))))))) ( -23.20)
>DroSim_CAF1 66206 99 + 1
AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGGAGUUCCCUUAUCUCG---------CUGCGGCCCUCGAUCCCCACUCCCCCUGGAAUCCCCAAUGCCAUU
....(((((((((((((((((........(((((....)))))..........(---------(....))..)))).))))))......(((.....))).))))))) ( -29.90)
>DroEre_CAF1 64896 96 + 1
AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGGAGUUCUCUUAUCUCG---------CUGCCGCCCUCGAUCCCCACUC---CUGGAAUCCCCAAUGCCAUU
....(((((((((((((((((........(((((....)))))..........(---------(....))..)))).))))))..---.(((.....))).))))))) ( -29.50)
>DroYak_CAF1 65209 99 + 1
AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGGAGUUCUCUUAUCUCG---------CUGCGGCCCUCGAUCCCCACUCCCCCUGGAAUCCCCAAUGCCAUU
....(((((((((((((((((........(((((....)))))..........(---------(....))..)))).))))))......(((.....))).))))))) ( -29.90)
>DroPer_CAF1 72626 92 + 1
AGCAGAUGGCGGAGGGAUCGUAUAAAUUUAGCUUAUCGGAGCGC-CAUAUCUCAUUAUUCACUCUGCUGCC--------CCG-----CUCGGAGUC--GGAUGCCAUU
....((((((...(((((..((......))((((....))))..-...)))))...((((((((((..((.--------..)-----).)))))).--)))))))))) ( -22.50)
>consensus
AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGGAGUUCCCUUAUCUCG_________CUGCGGCCCUCGAUCCCCACUCCCCCUGGAAUCCCCAAUGCCAUU
....(((((((.(((((............(((((....)))))....................................(((.......)))...))))).))))))) (-18.30 = -18.63 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:31 2006