| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,572,114 – 12,572,207 |
| Length | 93 |
| Max. P | 0.924743 |
| Location | 12,572,114 – 12,572,207 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.55 |
| Mean single sequence MFE | -19.12 |
| Consensus MFE | -14.37 |
| Energy contribution | -15.15 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12572114 93 - 27905053 AGGUAGCUAACUUGGCAUCACCAAUACCCUCCAUGUCUUUCCUUUCCCCC--CUUUGCCAACUGUUUUGACCAACUCGCUAAGCAAGCUGCACUU ..((((((...((((((.................................--...)))))).((((((((.....)))..))))))))))).... ( -14.92) >DroSec_CAF1 60881 95 - 1 AGGUACCUAACUUGGCAUCACCGAUACCCUCCGUUUCUUUCCUCUUCCCCCUUUUCACCAACCGUUUUGACCAACUCGCUAAGCAAGCUGCACUU ..(((.((..((((((......((.((.....)).))..........................(((......)))..))))))..)).))).... ( -10.40) >DroSim_CAF1 60840 94 - 1 AGGUAGCUAACUUGGCAUCACCGAUACCCUCCGUGUCAUUCCU-UUCCGCCCCUUCGCCGACCGUUUUGACCAACUCGCUAAGCAAGCUGCACUU ..((((((..((((((......(((((.....)))))......-.((.((......)).))................))))))..)))))).... ( -23.20) >DroEre_CAF1 59272 94 - 1 AGGUAGCCAACUUGGCAGCACAGAUACCCUCCGUGUCUCUCCCCUCCUCCCCCUUCGCCGA-CGUUCUGACCAACUCGCUAAGCAAGCUGCACUU ..(((((...((((((.....((((((.....)))))).....................((-.(((......)))))))))))...))))).... ( -20.40) >DroYak_CAF1 59404 93 - 1 AGGUAGCUAACUUGGCAGCACCGACACCCUCCGUGUCUUUCUUUUCCUCCCC--UCGUCGACCGUUUUGACCAACUCGCUAAGCAAGCUGCACUU ..((((((..((((((......(((((.....)))))...............--..(((((.....)))))......))))))..)))))).... ( -26.50) >DroAna_CAF1 58830 83 - 1 AAGCUGCUGUCUUGGCAGUACUGCCGCUCCUCCUGCCUUCCCG------CC------CCGCCUCUUCUGGCCAUCUCCCCAAGCAAGCUGCACUU ..((.(((.....((((....))))(((......((......)------).------..(((......)))..........))).))).)).... ( -19.30) >consensus AGGUAGCUAACUUGGCAGCACCGAUACCCUCCGUGUCUUUCCU_UCCCCCCCCUUCGCCGACCGUUUUGACCAACUCGCUAAGCAAGCUGCACUU ..((((((..((((((......(((((.....)))))...............................((.....))))))))..)))))).... (-14.37 = -15.15 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:25 2006