| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,568,781 – 12,568,875 |
| Length | 94 |
| Max. P | 0.602111 |
| Location | 12,568,781 – 12,568,875 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 92.71 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -23.88 |
| Energy contribution | -23.88 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.20 |
| Structure conservation index | 1.04 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12568781 94 + 27905053 GACAU----AUGUCUGGGAUUAGUGAGCCUUAGGGCUGGCUAAUAAAAAAGCAAACAUUGAAGUAGUGUGACAAGAUGCGAUAGAACCUGUUGCUGCU (((..----..)))....((((((.((((....)))).)))))).....((((.((((((...))))))........(((((((...))))))))))) ( -26.80) >DroSec_CAF1 57605 94 + 1 GACAU----AUGUCUGGGAUUAGUGAGUCUUAGGGCUGGCUAAUAAAAAAGCAAACAUUGAAGUAGUGUGACAAGAUGCGAUAGAACCUGUUGCUGCU (((..----..)))....((((((.((((....)))).)))))).....((((.((((((...))))))........(((((((...))))))))))) ( -24.10) >DroSim_CAF1 57576 94 + 1 GACAU----AUGUCUGGGAUUUGUGAGUCUUAGGGCUGGCUAAUAAAAAAGCAAACAUUGAAGUAGUGUGACAAGAUGCGAUAGAACCUGUUGCUGCU (((..----..)))....(((.((.((((....)))).)).))).....((((.((((((...))))))........(((((((...))))))))))) ( -19.60) >DroYak_CAF1 55993 98 + 1 GACAUAAGUAUGUCUGGGAUUAGUGACUCUUAGGAAUGGCUAAUAAAAAAGCAAGCAGUGAGGAAGUGUGACAAGAUGCGAUGGAACCUGUUGCUGCU (((((....)))))....((((((.(.((....)).).)))))).........(((((..(...((.((..((........))..)))).)..))))) ( -21.60) >consensus GACAU____AUGUCUGGGAUUAGUGAGUCUUAGGGCUGGCUAAUAAAAAAGCAAACAUUGAAGUAGUGUGACAAGAUGCGAUAGAACCUGUUGCUGCU (((((....)))))....((((((.((((....)))).)))))).....((((.(((((.....)))))........(((((((...))))))))))) (-23.88 = -23.88 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:24 2006