Locus 4808

Sequence ID	3R_DroMel_CAF1
Location	12,568,421 – 12,568,513
Length	92
Max. P	0.935653

overview

Window 4

Location	12,568,421 – 12,568,513
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	92.83
Mean single sequence MFE	-27.52
Consensus MFE	-23.98
Energy contribution	-23.46
Covariance contribution	-0.52
Combinations/Pair	1.13
Mean z-score	-1.59
Structure conservation index	0.87
SVM decision value	1.25
SVM RNA-class probability	0.935653
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12568421 92 + 27905053
UUGUUUUGGAGGUGGGAAUGCGGUCAUCAAACCAAAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCUCGGACAUCUUGCCUAAAAUAUAG
.((((((..(((..(((.(.(((((((...............))))))).)...((.(((((.....))))))).)))..)))))))))... ( -25.26)
>DroSec_CAF1 57288 92 + 1
UUGUUUUGGAGGUGGGAAUGCGGUCAUCAACCCAGAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCACGGACAUCUUGCUUAAAAUAUAG
.(((((((..((..(((.(.(((((((...............))))))).).(((((((......)))))))...)))..)))))))))... ( -26.86)
>DroSim_CAF1 57259 92 + 1
UUGUUUUGGAGGUGGGAAUGCGGUCAUCAACCCGGAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCACGGACAUCUUGCCUAAAAUAUAG
.((((((..(((..(((.(.(((((((.((..(....)..))))))))).).(((((((......)))))))...)))..)))))))))... ( -32.50)
>DroEre_CAF1 55668 92 + 1
UUGUUUUGGAGGUGGGAAUACGGUCAUCAACCCGGAAGAAUUAUGGCCGGAAUCGUGCUGGGGAUGGAUCGGACAUCGUGUCUAAAAUGUAU
..((((((((((((.((...(((((((.((..(....)..)))))))))...)).))))...((((.......))))...)))))))).... ( -25.60)
>DroYak_CAF1 55622 92 + 1
UUGUUUUGGAGGUGGGAAUACGGUCAUCAACCCGGAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCUCGGACAUCUUGCUUGAAAUACAU
.(((.((..(((..(((...(((((((.((..(....)..))))))))).....((.(((((.....))))))).)))..)))..)).))). ( -27.40)
>consensus
UUGUUUUGGAGGUGGGAAUGCGGUCAUCAACCCGGAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCUCGGACAUCUUGCCUAAAAUAUAG
.((((((((.((((.((.(.(((((((.((..(....)..))))))))).).)).)))).((((((.......))))))..))))))))... (-23.98 = -23.46 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:23 2006