| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,566,557 – 12,566,674 |
| Length | 117 |
| Max. P | 0.549651 |
| Location | 12,566,557 – 12,566,674 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.51 |
| Mean single sequence MFE | -30.11 |
| Consensus MFE | -18.75 |
| Energy contribution | -18.47 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12566557 117 + 27905053 --AGCGGCGAGGCAGCAGCGCAUAAUUGAAUCGAAGCGCUCU-UCGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAACCGCCCCCAGCGCCAUUCCAUAAACGCUGGCUUAA --...((((..((....))((((((((((...(((((((...-..)))))))(((....)))..)))))))....)))........)))).((((((............))))))..... ( -33.00) >DroVir_CAF1 57933 116 + 1 --GGUUGCAG-CUGGCAGCGCGUAAUUGAAUUGAAGCGUUCU-UCGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAAACGCCCCCAGCGCCAUUUCAUAAACGCUGCCUUAA --........-..((((((((((((((((...(((((((...-..)))))))(((....)))..))))))....))))........(((.....))).............)))))).... ( -28.50) >DroGri_CAF1 56561 118 + 1 --GGCUGGGGGUCAGCAGCGUAUAAUUGAAUUGAAGCGUUCUUUUGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUAAUAAACGCCCCCAGCGCCAUUUCAUAAACGUUGCCAUAA --.(((((((((.....((((.(((((((...(((((((......)))))))(((....)))..)))))))...)))).........)))))))))........................ ( -33.64) >DroWil_CAF1 21171 110 + 1 UCGACAGCCGGCAACGGGCGCAUAAUUGAAUUGGAG----------CGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAACCGCCCCCAGCGCCAUUUCAUAAAUGUCGGCUUAA .....((((((((...(((((((.....(((((..(----------(((((........)))))))))))....)))).........((.....)))))..........))))))))... ( -27.52) >DroMoj_CAF1 63351 110 + 1 --------AG-GGGCCAAUGCAUAAUUGAAUUGAAGCGCUCU-UCGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAAACGCCCCCAGCGCCAUUUCAUAAACGCAGCCUUAA --------.(-((((..((((((((((((...(((((((...-..)))))))(((....)))..)))))))....))))).......)))))..(((............)))........ ( -28.30) >DroAna_CAF1 54115 116 + 1 --UUGGGUGA-ACAGCGGCGCAUAAUUGAAUUGAAGCGCUCU-UUGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAACCGCCCCCAGCGCCAUUCCAUAAACGUUGGCUUAA --..(((((.-.....(..((((((((((...(((((((...-..)))))))(((....)))..)))))))....)))..).....)))))((((((............))))))..... ( -29.70) >consensus __GGCGGCGG_CCAGCAGCGCAUAAUUGAAUUGAAGCGCUCU_UCGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAAACGCCCCCAGCGCCAUUUCAUAAACGCUGCCUUAA ...............((((((((((((((...(((((((......)))))))(((....)))..)))))))....)))........(((.....))).............))))...... (-18.75 = -18.47 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:22 2006