| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,554,067 – 12,554,172 |
| Length | 105 |
| Max. P | 0.604078 |
| Location | 12,554,067 – 12,554,172 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.71 |
| Mean single sequence MFE | -26.33 |
| Consensus MFE | -15.09 |
| Energy contribution | -15.15 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12554067 105 - 27905053 CCACUGUGCGGACGUCUUCCCGUGGCAGUUGCAAAAUCAUGUUUUAAGGUGUUUUUGAUACCUAAUAAAAACAACAACACGGCCCGGCCAAAA-ACACAUGCAAA--G------- ..(((((((((........)))).)))))((((......((((((.(((((((...)))))))....)))))).......(((...)))....-.....))))..--.------- ( -23.90) >DroVir_CAF1 42496 109 - 1 CCAUUGUUCAUUGGUCGCUUCUUGGCAGUUGCGAAAUCAUGUUUUAAGGUGUUUUUGAUACCUAAUAAAAACAACAACACAGCCCCGGCAAGAAGCACACACAGUUAC-U----- (((........)))..((((((((.(.((((.(......((((((.(((((((...)))))))....))))))....).))))...).))))))))............-.----- ( -25.60) >DroPse_CAF1 43715 101 - 1 CCACUGUGCAGCCGCCUUUUCGUGGCAGUUGCAAAAUCAUGUUUUAAGGUGUUUUUGAUACCUAAUAAAAACAACAACACGGCCCGAC----A-ACACAUCCAAA--A------- ...(((((((((.(((.......))).))))).......((((((.(((((((...)))))))....)))))).....))))......----.-...........--.------- ( -23.20) >DroGri_CAF1 41149 114 - 1 CCAUUGUUUGUUGGACGUUUCUUGGCGGUUGCAAAAUCAUGUUUUAAGGUGUUUUUGAUACCUAAUAAAAACAACAACACAGCUCCGGCAAGAGGCACACACGCACAC-UUGCAC (((........)))..((((((((.(((..((.......((((((.(((((((...)))))))....))))))........)).))).))))))))......(((...-.))).. ( -30.46) >DroAna_CAF1 41911 113 - 1 CCACUGUGCGGACGUCUUCUCGCGGCGGUUGCAAAAUCAUGUUUUAAGGUGUUUUUGAUACCUAAUAAAAACAACAACACGGCCGGGCCAAGCAACACACACAGG--GCACACAC ((.(((((.(..((((.......))))(((((.......((((((.(((((((...)))))))....)))))).......(((...)))..))))).).))))))--)....... ( -31.60) >DroPer_CAF1 48175 101 - 1 CCACUGUGCAGCCGCCUUUUCGUGGCAGUUGCAAAAUCAUGUUUUAAGGUGUUUUUGAUACCUAAUAAAAACAACAACACGGCCCGAC----A-ACACAUCCAAA--A------- ...(((((((((.(((.......))).))))).......((((((.(((((((...)))))))....)))))).....))))......----.-...........--.------- ( -23.20) >consensus CCACUGUGCAGACGUCUUUUCGUGGCAGUUGCAAAAUCAUGUUUUAAGGUGUUUUUGAUACCUAAUAAAAACAACAACACGGCCCGGCCAAGA_ACACACACAAA__A_______ ...(((((((((.(((.......))).))))).......((((((.(((((((...)))))))....)))))).....))))................................. (-15.09 = -15.15 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:17 2006