| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,543,902 – 12,543,998 |
| Length | 96 |
| Max. P | 0.865969 |
| Location | 12,543,902 – 12,543,998 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 73.63 |
| Mean single sequence MFE | -23.51 |
| Consensus MFE | -13.13 |
| Energy contribution | -13.52 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12543902 96 - 27905053 AAGCAAAACGGCUGCGCAUGCGCGCAAGUCACUCAGCAACGAUGCACUGCGGAAAAA--UGGUA-C-AGUGACCAUUU-AAUUAUAAAAUCCUUUUUUUAA- ..(((....((((((((....)))).)))).....(((....)))..)))....(((--((((.-.-....)))))))-.....(((((......))))).- ( -23.30) >DroSec_CAF1 32864 89 - 1 AAGCAAAACGGCUGCGCAUGCGCGCAAGUCACUCAGCAACGAUGCACUGCGGGAAAA--UGGUU-U-AGUGACCAUUU-AACUAUAAAAUCCUU-------- ..(((....((((((((....)))).)))).....(((....)))..)))((..(((--(((((-.-...))))))))-..))...........-------- ( -26.30) >DroSim_CAF1 32770 96 - 1 AAGCAAAACGGCUGAGCAUGCGCGCAAGUCACUCAGCAACGAUGCACUGCGGGAAAA--UGGUU-C-AGUGACCAUUU-AAUUAUAAAAUCCUUGUUUUAA- ..(((.....((((((..((.((....)))))))))).....))).....(((((((--(((((-.-...))))))))-..........))))........- ( -24.00) >DroEre_CAF1 30608 91 - 1 AAGCAAAACGGCUGCGCAUGCGCGCAAGUCACUCAGCAACGAUGCACUGCGAGAAAG--UCA-A-C-CG------UGUCACUUAACAACUCCUUUUUUGACA ..(((....((((((((....)))).)))).....(((....)))..)))(((((((--...-.-.-..------(((......)))....))))))).... ( -19.80) >DroYak_CAF1 30067 83 - 1 AAGCAAAACGGCUGCGCAUGCGCGCAAGUCACUCAGCAACGAUGCACUGUGAGCAAA--UGA-A-C-AG--------------AAAAACUUAUCUCGCAAAA ..((.....((((((((....)))).)))).....(((....))).((((...(...--.).-)-)-))--------------.............)).... ( -18.90) >DroAna_CAF1 32429 93 - 1 AAGCAAAACGGCUGCGCAUGCGCGCAAGUCACUCAGCAACGAGGCACAGAGAGGAUAACUUGUUGCAAGUUGAGUUUU-GGCUUCAUAAUAAUU-------- (((((((((((((((((....)))).)))).....((((((((...............)))))))).......)))))-.))))..........-------- ( -28.76) >consensus AAGCAAAACGGCUGCGCAUGCGCGCAAGUCACUCAGCAACGAUGCACUGCGAGAAAA__UGGUA_C_AGUGACCAUUU_AAUUAUAAAAUCCUUUUUU_AA_ ..(((....((((((((....)))).)))).....((......))..))).................................................... (-13.13 = -13.52 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:13 2006