Locus 4798

Sequence ID 3R_DroMel_CAF1
Location 12,534,485 – 12,534,603
Length 118
Max. P 0.906722
window7872

overview

Window 2

Location 12,534,485 – 12,534,603
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 96.61
Mean single sequence MFE -34.56
Consensus MFE -33.66
Energy contribution -33.30
Covariance contribution -0.36
Combinations/Pair 1.08
Mean z-score -1.32
Structure conservation index 0.97
SVM decision value 1.05
SVM RNA-class probability 0.906722
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12534485 118 - 27905053
AUGCUUCUUUGUCUGGAUAAUGUUUCCGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCAUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUGCA
.(((..(((((((((((.(((.(((((.((((.....)))).))))).)))))).(((((((((....))))).(((((((((...)))).)))))...)))).))))))).)..))) ( -36.00)
>DroSec_CAF1 23450 118 - 1
AUGCUUCUUUGUCUGGAUAAUGUUUCCGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCAUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUGCA
.(((..(((((((((((.(((.(((((.((((.....)))).))))).)))))).(((((((((....))))).(((((((((...)))).)))))...)))).))))))).)..))) ( -36.00)
>DroSim_CAF1 23029 118 - 1
AUGCUUCCUUGUCUGGAUAAUGUUUCCGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCAUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUUCA
...((.(((((.((((.((((((((((.((((.....)))).))))).(((..((((..(((((....))))).))))..)))......)))))..))))..))))).))........ ( -36.80)
>DroEre_CAF1 21244 118 - 1
AUGCUUCUUUGUCUGGAUAAUGUUUCUGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAACGGUUGUUGUCAGCCUUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUGCA
.(((..(((((((((((.(((.(((((.((((.....)))).))))).)))))).(((((((((....))))).(((((((((...)))).)))))...)))).))))))).)..))) ( -33.60)
>DroYak_CAF1 20402 118 - 1
AUGCUCCUUUGUCUGGAUAAUGUUUCUGUCUGAGUUGAGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCUUUUAAGGAUAUAAUCCAUUAGGCCAGUUCAAGGCAGAUGUUGCA
.(((..(((((((((((.(((.(((((.(((.......))).))))).)))))).(((((((((....)))))......((((...)))).........)))).))))))).)..))) ( -30.40)
>consensus
AUGCUUCUUUGUCUGGAUAAUGUUUCCGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCAUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUGCA
...((.(((((.((((.((((...(((.((((.....)))).)))(((..((((.(((.(((((....))))).))).)))).....)))))))..))))..))))).))........ (-33.66 = -33.30 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:11 2006