| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,530,245 – 12,530,343 |
| Length | 98 |
| Max. P | 0.690379 |
| Location | 12,530,245 – 12,530,343 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 83.14 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -19.12 |
| Energy contribution | -19.23 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12530245 98 - 27905053 GCGUGUUGGAAGCCCAAA-----AAACCAAAAU-----GAGCUUCUAAGGCUUGGCCGUCGCUACAAACAUACAAACACACUUAAACA------ACUUUUGGGUAUCUGGGAAG ...(.(..((.(((((((-----(.........-----(((((.....)))))(((....))).........................------..)))))))).))..).).. ( -20.30) >DroSec_CAF1 19297 97 - 1 GCGUGUUGGAAACCCAAA------AACCAAAAU-----GAGCUUCUAAGGCUUGGCCGUCGCUACAAACAUACAAACACACUUAUACA------ACUUUUGGGUUUCUGGGAAG ...(.(..((((((((((------(........-----(((((.....)))))(((....))).........................------..)))))))))))..).).. ( -23.50) >DroSim_CAF1 18920 103 - 1 GCGUGUUGGAAACCCAAAAAAAAAAACCAAAAU-----GAGCUUCUAAGGCUUGGCCGUCGCUACAAACAUACAAACACACUUAUACA------ACUUUUGGGUUUCUGGGAAG ...(.(..(((((((((((..............-----(((((.....)))))(((....))).........................------..)))))))))))..).).. ( -23.50) >DroEre_CAF1 16946 99 - 1 GCGUGCUGGAAACCCAAAA----AAACCAAAAU-----GAGCUUCUAAGGCUUGGCCGUCGCAACAAACAUACAUACACACUUAUACA------AUUUUUGGGUUUCUGGGAAG .....(..(((((((((((----(.........-----(((((.....))))).((....))..........................------.))))))))))))..).... ( -25.10) >DroYak_CAF1 15980 98 - 1 GCGUGCUGGAAACCCAAA-----AAACCAAAAU-----GAGCUUCUAAGGCUUGGCCGUUGCUGCAAACAUACAGAGACACUUAUAUA------UUUUUUGGGUUUCUGAAAAG .......(((((((((((-----(((.....((-----(((.......(((...)))((..(((........)))..)).)))))...------))))))))))))))...... ( -26.30) >DroAna_CAF1 18953 105 - 1 GCGUGUUGGGAACCCAAA-----AAACAAAAAUCAAAAUAGCUGCGAAGGCUUGGCCGCCGCCACAAACCAACAAACAAACAUACAAACACUUUUUUUUUGGGUUUCUUU---- .......(((((((((((-----(((.................((....)).((((....))))..............................))))))))))))))..---- ( -24.00) >consensus GCGUGUUGGAAACCCAAA_____AAACCAAAAU_____GAGCUUCUAAGGCUUGGCCGUCGCUACAAACAUACAAACACACUUAUACA______ACUUUUGGGUUUCUGGGAAG .......(((((((((((....................(((((.....)))))(((....)))..................................)))))))))))...... (-19.12 = -19.23 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:07 2006