Locus 4793

Sequence ID 3R_DroMel_CAF1
Location 12,526,995 – 12,527,089
Length 94
Max. P 0.598579
window7865

overview

Window 5

Location 12,526,995 – 12,527,089
Length 94
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 83.79
Mean single sequence MFE -25.98
Consensus MFE -17.63
Energy contribution -18.63
Covariance contribution 1.00
Combinations/Pair 1.17
Mean z-score -2.24
Structure conservation index 0.68
SVM decision value 0.13
SVM RNA-class probability 0.598579
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12526995 94 - 27905053
AUUGUCUUCUGGUAGUUUGGUUUUUUUU-------------AGGGAACCGUUUUUUAUGUG--UGCGGCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUCCAGAGC
......((((((..(((((((((((...-------------.)))))))((((((((((((--(((......)).)))))))))))))......))))....)))))). ( -30.50)
>DroSec_CAF1 16023 92 - 1
AUUGUCUUCUGGUCGUUUGGUUUUU--U-------------AGGGAACCGUGUUUUAUGUG--CGCUUCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUCCAGAGC
......((((((.....((((((((--(-------------(((....)((.(((((((((--.(((....)))..))))))))).)).)))))))))))..)))))). ( -25.60)
>DroSim_CAF1 15691 91 - 1
AUUGUCUUCUGGUCGUUUGGUUUUU--U--------------GGGAACCGUUUUUUAUGUG--CGCGUCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUCCAGAGC
......((((((.((((((((((..--.--------------..)))))((((((((((((--.((......))..))))))))))))......))).))..)))))). ( -27.90)
>DroEre_CAF1 13648 93 - 1
AUUGUCUUCUGGUCGUUUGGUCUUU-UU-------------AGGGAACCGUUUUUUAUGUG--AGCGUCUGAGCAACACAUGAGAAACAUUAAAAAGUCGUUCCAGAGG
.....(((((((.....(((.((((-((-------------(((....)((((((((((((--.((......))..)))))))))))).)))))))))))..))))))) ( -29.30)
>DroYak_CAF1 12772 93 - 1
AUUGUCUUCUGGUCGUUUGGUUUUU-UU-------------AGGGAACCGUUUUUUAUGUG--AGCGUCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUUCAGAGG
.....(((((((.(((((((((((.-..-------------..))))))((((((((((((--.((......))..))))))))))))......))).))..))))))) ( -27.70)
>DroAna_CAF1 15848 108 - 1
AUUGUCUUUUGGUUUUUUCCUCUUU-UUUUUUUUAACUCGAAAGGAACUGUUUUUUAAGGCAAAACAUGAGAGCAACACAUGAGAUACAUUAAAAAAUCAUUCGAGAUG
...(((((.(((((((((.(((((.-....((((..((..(((((.....)))))..))..))))...)))))......(((.....))).)))))))))...))))). ( -14.90)
>consensus
AUUGUCUUCUGGUCGUUUGGUUUUU_UU_____________AGGGAACCGUUUUUUAUGUG__AGCGUCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUCCAGAGC
.......(((((.....((((((((.................((...))((((((((((((...((......))..))))))))))))....))))))))..))))).. (-17.63 = -18.63 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:04 2006