Locus 479

Sequence ID 3R_DroMel_CAF1
Location 1,796,045 – 1,796,135
Length 90
Max. P 0.977606
window776

overview

Window 6

Location 1,796,045 – 1,796,135
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 80.17
Mean single sequence MFE -30.30
Consensus MFE -19.65
Energy contribution -19.15
Covariance contribution -0.50
Combinations/Pair 1.20
Mean z-score -3.62
Structure conservation index 0.65
SVM decision value 1.80
SVM RNA-class probability 0.977606
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1796045 90 + 27905053
AGGAACAAAAACAGGC-GCCCA---GGAAAUUAACCAACAUU-UGGGCAGCUAAUUGGCUGCCUAAAUGGCUCAAGCUGCUCGUGUGGAAAUCCA
.(((.((...((..((-((...---((.......))..((((-(((((((((....)))))))))))))......)).))..)).))....))). ( -31.60)
>DroVir_CAF1 124109 86 + 1
AGUGGG--------GG-GCCCAAAAUGAAAUUAACCAACAUUUUGGGCAGCUAAUUGGUUGCCUAAAUGGCCCAAGCAGCUCGUGUGGAAAUCCA
..((((--------..-((((((((((...........))))))))))((((..((((..(((.....)))))))..))))..........)))) ( -29.40)
>DroPse_CAF1 95910 90 + 1
AGGAAGAAA-ACAUGCUAGCCA---GGAAAUUAACCAACAUU-UGGGUAGCUAAUUGGCUGCCUAAAUGGCUCAAGUUGCUCGUGUGGAAAUCCA
.(((.....-.(((((.(((..---((.......))..((((-(((((((((....))))))))))))).........))).)))))....))). ( -30.40)
>DroGri_CAF1 110022 93 + 1
ACUGGCAACAAUAAGG-GGCCUAAAUGAAAUUAACCAACAUU-UGGGCAGCUAAUUGGUCGCCUAAAUGGUCCAAGCUGCUCGUGUGGAAAUCCA
...(((..(.....).-.))).............(((.(((.-.((((((((...(((..(((.....))))))))))))))))))))....... ( -27.80)
>DroMoj_CAF1 118508 81 + 1
AGUGGA-------------UCCAAGCGAAAUUAACCAACAUU-UGGGCAGCUAAUUGGUUGCCUAAAUGGCCCAAGCAGCUCGUGUGGAAAUCCA
..((((-------------((((.((((..........((((-(((((((((....)))))))))))))((....))...)))).))))..)))) ( -32.20)
>DroPer_CAF1 98501 90 + 1
AGGAAGAAA-ACAUGCUAGCCA---GGAAAUUAACCAACAUU-UGGGUAGCUAAUUGGCUGCCUAAAUGGCUCAAGUUGCUCGUGUGGAAAUCCA
.(((.....-.(((((.(((..---((.......))..((((-(((((((((....))))))))))))).........))).)))))....))). ( -30.40)
>consensus
AGGAAGAAA_ACA_GC_GGCCA___GGAAAUUAACCAACAUU_UGGGCAGCUAAUUGGCUGCCUAAAUGGCCCAAGCUGCUCGUGUGGAAAUCCA
..................................(((.(((...((((((((...(((..(((.....))))))))))))))))))))....... (-19.65 = -19.15 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:13 2006