Locus 4785

Sequence ID 3R_DroMel_CAF1
Location 12,515,396 – 12,515,504
Length 108
Max. P 0.662651
window7851

overview

Window 1

Location 12,515,396 – 12,515,504
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 87.14
Mean single sequence MFE -23.65
Consensus MFE -20.00
Energy contribution -20.28
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.74
Structure conservation index 0.85
SVM decision value 0.27
SVM RNA-class probability 0.662651
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12515396 108 - 27905053
GCGAAAACGCUUAAAACAAAAUUUAU-UUAGUCGGCCCAAACGGAGGUCGCGCGAGAUUCGCAAUGCGACAAAAAUGCGACUAAAAAUAAAGCAAAUAACGACACA-----------AAG
(((....)))...............(-(((((((..((....))..((((((((.....)))...))))).......)))))))).....................-----------... ( -24.00)
>DroPse_CAF1 2558 118 - 1
GCGAAAACGCUUAAAACGAAAUUUAU-UUAGUCGGCCCA-GCGGAGGUCGCGAGAGAUUCGCAAUGCGACAAAAAUGCGACUAAAAAUAAGGCAAAACGCGAAGAAAAAAGAGUCCGAAA
(((....)))......((.......(-(((((((((...-(((((..((....))..)))))...))..((....))))))))))......((.....))...............))... ( -24.10)
>DroSec_CAF1 4414 108 - 1
GCGAAAACGCUUAAAACAAAAUUUAU-UUAGUCGGCCCAAACGGAGGUCUCGCGAGAUUCGCAAUGCGACAAAAAUGCGACUAAAAAUAAAGCAAAUAACGACACA-----------AAG
(((....)))...............(-((((((((((........))))..(((....((((...))))......)))))))))).....................-----------... ( -18.90)
>DroYak_CAF1 1316 108 - 1
GCGAAAACGCUUAAAACAAAAUUUAU-UUAGUCGGCCCAAACGGAGGUCGCGCGAGAUUCGCAAUGCGACAAAAAUGCGACUAAAAAUAAAGCAAAUAACGACACA-----------AAG
(((....)))...............(-(((((((..((....))..((((((((.....)))...))))).......)))))))).....................-----------... ( -24.00)
>DroAna_CAF1 5478 107 - 1
GCGAAAACGCUUAAAACGAAAUUUAU-UUAGUCGGCCCAGGCGGAGGUCGCGCGAGAUUCGCAAUGCGACAAAAAUGCGACUAAAAAUAAAGCAAGC-ACUACCCA-----------GAA
(((....)))...............(-(((((((((....))....((((((((.....)))...))))).......))))))))............-........-----------... ( -25.80)
>DroPer_CAF1 6477 118 - 1
GCGAAAACGCUUAAAACGAAAUUUAUUUUAGUCGGCCCA-GCGGAGGUCGCGAGAGAUUCGCAAUGCGACAAAAAUGCGACUAAAAAUAAGGCAAAACGCGAAGAA-AAAGAGUCCGAAA
(((....)))......((...(((((((((((((((...-(((((..((....))..)))))...))..((....))))))).))))))))((.....))......-........))... ( -25.10)
>consensus
GCGAAAACGCUUAAAACAAAAUUUAU_UUAGUCGGCCCAAACGGAGGUCGCGCGAGAUUCGCAAUGCGACAAAAAUGCGACUAAAAAUAAAGCAAAUAACGACACA___________AAA
(((....)))...........(((((..((((((..((....))..((((((((.....)))...))))).......))))))...)))))............................. (-20.00 = -20.28 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:52 2006