| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,511,770 – 12,511,868 |
| Length | 98 |
| Max. P | 0.992221 |
| Location | 12,511,770 – 12,511,868 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 96.63 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -21.10 |
| Energy contribution | -21.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12511770 98 + 27905053 UGGCCUUUUUACUUUUCCGUAUACGUUGUU-UUUUUUUUUUGCAUUUUUUUAUGUACACGCCAAGCCAAACAGCUUGAAUGGAAGUAAUGAUGCUGGCC .((((...(((((..(((((.((.((((((-(........(((((......)))))...((...)).))))))).)).)))))))))).......)))) ( -21.20) >DroSec_CAF1 885 97 + 1 UGGCCUUUUUACUUUUCCGUAUACCUUG--GCUUUUUUUUUGCAUUUUUUUAUGUACACGCCAAGCCAAACAGCUUGAAUGGAAGUAAUGAUGCUGGCC .((((...(((((..(((((.....(((--((((......(((((......)))))......))))))).(.....).)))))))))).......)))) ( -22.20) >DroSim_CAF1 957 99 + 1 UGGCCUUUUUACUUUUCCGUAUACGUUGUUGCUUUUUUUUUGCAUUUUUUUAUGUACACGCCAAGCCAAACAGCUUGAAUGGAAGUAAUGAUGCUGGCC .((((...(((((..(((((.((.((((((((((......(((((......)))))......))))..)))))).)).)))))))))).......)))) ( -25.00) >consensus UGGCCUUUUUACUUUUCCGUAUACGUUGUUGCUUUUUUUUUGCAUUUUUUUAUGUACACGCCAAGCCAAACAGCUUGAAUGGAAGUAAUGAUGCUGGCC .((((...(((((..(((((....................(((((......))))).....(((((......))))).)))))))))).......)))) (-21.10 = -21.10 + -0.00)
| Location | 12,511,770 – 12,511,868 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 96.63 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -23.62 |
| Energy contribution | -23.62 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.19 |
| Structure conservation index | 0.98 |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.992221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12511770 98 - 27905053 GGCCAGCAUCAUUACUUCCAUUCAAGCUGUUUGGCUUGGCGUGUACAUAAAAAAAUGCAAAAAAAAAA-AACAACGUAUACGGAAAAGUAAAAAGGCCA ((((.......((((((((..(((((((....))))))).((((((......................-......)))))))))..)))))...)))). ( -23.69) >DroSec_CAF1 885 97 - 1 GGCCAGCAUCAUUACUUCCAUUCAAGCUGUUUGGCUUGGCGUGUACAUAAAAAAAUGCAAAAAAAAAGC--CAAGGUAUACGGAAAAGUAAAAAGGCCA ((((.......((((((((..(((((((....))))))).((((((.......................--....)))))))))..)))))...)))). ( -23.63) >DroSim_CAF1 957 99 - 1 GGCCAGCAUCAUUACUUCCAUUCAAGCUGUUUGGCUUGGCGUGUACAUAAAAAAAUGCAAAAAAAAAGCAACAACGUAUACGGAAAAGUAAAAAGGCCA ((((.......((((((((..(((((((....))))))).((((((.........(((.........))).....)))))))))..)))))...)))). ( -24.84) >consensus GGCCAGCAUCAUUACUUCCAUUCAAGCUGUUUGGCUUGGCGUGUACAUAAAAAAAUGCAAAAAAAAAGCAACAACGUAUACGGAAAAGUAAAAAGGCCA ((((.......((((((((..(((((((....))))))).((((((.............................)))))))))..)))))...)))). (-23.62 = -23.62 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:39 2006