Locus 4770

Sequence ID 3R_DroMel_CAF1
Location 12,502,151 – 12,502,242
Length 91
Max. P 0.532640
window7822

overview

Window 2

Location 12,502,151 – 12,502,242
Length 91
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 84.30
Mean single sequence MFE -31.62
Consensus MFE -22.27
Energy contribution -21.95
Covariance contribution -0.32
Combinations/Pair 1.09
Mean z-score -1.61
Structure conservation index 0.70
SVM decision value -0.00
SVM RNA-class probability 0.532640
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12502151 91 + 27905053
CCAUGGCAAUGGACGUGGACGUG------GACGU------------GAACGUGGACAUGGACAGGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAAGGAACGAAA
(((((........))))).((((------.(((.------------...)))...))))..((.(((.(.(((((......)))))).))).))............... ( -29.10)
>DroSec_CAF1 23624 91 + 1
CCAUGGCAAUGGACGUGGACGUG------GACGU------------GAACGUGGACAUGGACAGGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAAGGAACGAAA
(((((........))))).((((------.(((.------------...)))...))))..((.(((.(.(((((......)))))).))).))............... ( -29.10)
>DroSim_CAF1 22987 85 + 1
CCAUGGCAAUGGACGU------G------GACGU------------GAACGUGGACAUGGACAGGCGGCACAGGGACAAGCUCCUGGGCGCGUGAAAAAAGGAACGAAA
(((((...(((.(((.------.------..)))------------...)))...))))).((.(((.(.(((((......)))))).))).))............... ( -26.80)
>DroEre_CAF1 24012 109 + 1
CCAUGGCCAUGGACGUGGAAGUGGACGUGGACGUGGACAUGGACAUGGACGUGGACAUGGACAGGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAGGGAACGAAA
(((((.(((((..((((...(((..((......))..)))...))))..))))).))))).((.(((.(.(((((......)))))).))).)).....(....).... ( -43.40)
>DroYak_CAF1 23990 97 + 1
CCAUGGCCAUGGACGUGGACGUAGUUGUGGAUGU------------GGAUGUCGACAUGGACAAGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAAGGAACGAGA
.(((((((..(((((((..(....(((((..(((------------...((((......)))).))).))))))..)))).)))..))).))))............... ( -29.70)
>consensus
CCAUGGCAAUGGACGUGGACGUG______GACGU____________GAACGUGGACAUGGACAGGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAAGGAACGAAA
(((((...(((.((((..............))))...............)))...))))).((.(((.(.(((((......)))))).))).))............... (-22.27 = -21.95 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:25 2006