| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,499,620 – 12,499,715 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 12,499,620 – 12,499,715 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 76.16 |
| Mean single sequence MFE | -17.75 |
| Consensus MFE | -10.56 |
| Energy contribution | -10.28 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12499620 95 - 27905053 A---CAUCCACUGUACCAAAACCU---UAA---CAGCAACAAAAACUGCAAACUGCAAUG---CUCAGCGCCCAUUUUGCGCCCAAAAAAGCACCAACAAUUGCGGC .---......((((..........---..)---))).........((((((.......((---((..((((.......)))).......)))).......)))))). ( -13.74) >DroPse_CAF1 22257 102 - 1 U--CGUUCCACUGUAUUUCAGCAGGGACAACAGCAAAAACAACAACUGCAAGCUGCAAUG---CUCGGCGCACAUUUGGCGCCCAAAAAAGCUCCAACAAUUGCGGC .--.(((((.(((.....)))..)))))....(((...........)))..((((((((.---...((.((...(((((...)))))...)).))....)))))))) ( -27.80) >DroEre_CAF1 21464 88 - 1 A---CACCCACUGUACC----------UUA---CAGCAACAAAGACUGCAAACUGCAGUG---CUCAGCGCCCAUUUUGCGCCCAAAAAAGCUCCAACAAUUGCGGC .---......(((((..----------...---.(((.......(((((.....))))).---....((((.......))))........)))........))))). ( -17.14) >DroYak_CAF1 21489 98 - 1 A---CACCCACUGUGCCAAAACCU---UAA---CAGCAACAAAAACUGCAAACUGCAAUGCAACUCAGCGCCCAUUUUGCGCCCAAAAAAGCUCCAACAAUUGCGGC .---..........(((.......---...---..(((........))).....(((((((......))((...(((((....)))))..)).......)))))))) ( -14.50) >DroAna_CAF1 20354 80 - 1 AUUUGCCCCACUGUC--------U---U-------------AGAACUGCAAACUGCAAUG---CUCAGCGUCCAUUUUGCGCCCAAAAAAGCUCCAACAAUUGCGGC .(((((....(((..--------.---)-------------))....)))))(((((((.---...(((.....(((((....)))))..)))......))))))). ( -12.40) >DroPer_CAF1 23015 101 - 1 U--CGUUCCACUGUAUUUCAGCCC-GACAAAAGCAAAAACAACAACUGCAAGCUGCAAUG---CUCAGCGCACAUUUGGCGCCCAAAAAAGCUCCAACAAUUGCGGC .--.(((...(((.....)))...-)))....(((...........)))..(((((((((---(.....))....((((.((........)).))))..)))))))) ( -20.90) >consensus A___CACCCACUGUACC__A_CCU___UAA___CAGCAACAAAAACUGCAAACUGCAAUG___CUCAGCGCCCAUUUUGCGCCCAAAAAAGCUCCAACAAUUGCGGC ....................................................(((((((........((((.......))))........(......).))))))). (-10.56 = -10.28 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:24 2006